BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0671100 Os04g0671100|J065095M17
         (81 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37250.1  | chr2:15641991-15643318 FORWARD LENGTH=285           67   2e-12
AT2G39270.1  | chr2:16399983-16401408 FORWARD LENGTH=296           65   8e-12

>AT2G37250.1 | chr2:15641991-15643318 FORWARD LENGTH=285
          Length = 284

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 37  EPVEDFYRARGKLLEFNLPGGIPESWPKLLQALNLDPGNERSAAA 81
           +P+E++YR +GKL+EF+LPGGIPESWP+LL+AL LD   E+ + A
Sbjct: 239 QPLEEYYRTKGKLMEFDLPGGIPESWPRLLEALRLDDYEEKQSVA 283



>AT2G39270.1 | chr2:16399983-16401408 FORWARD LENGTH=296
          Length = 295

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 36/44 (81%)

Query: 37  EPVEDFYRARGKLLEFNLPGGIPESWPKLLQALNLDPGNERSAA 80
           +PVE+FY+ RGKLLEF LPGGIPESW +LL+AL+L+   + + A
Sbjct: 252 QPVEEFYKKRGKLLEFELPGGIPESWARLLRALHLEDDKQSAIA 295



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,916,026
Number of extensions: 68167
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 29
Effective length of database: 9,680,937
Effective search space: 280747173
Effective search space used: 280747173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)