BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0117900 Os03g0117900|AK108930
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0117900 Similar to Transcription factor 277 3e-75
Os02g0676800 Similar to Dehydration responsive element bind... 112 1e-25
Os10g0523900 110 7e-25
Os04g0572200 97 8e-21
Os01g0968800 Similar to Dehydration responsive element bind... 92 2e-19
Os06g0553700 86 3e-17
Os02g0231000 84 1e-16
Os02g0656600 Similar to Dehydration responsive element bind... 82 2e-16
Os10g0560700 Similar to Transcriptional factor TINY 82 3e-16
Os04g0550200 Pathogenesis-related transcriptional factor an... 82 3e-16
Os02g0657000 AP2 domain-containing protein Rap211 80 8e-16
Os04g0549700 Similar to Dehydration responsive element bind... 78 3e-15
Os01g0200600 Similar to Avr9/Cf-9 rapidly elicited protein ... 75 3e-14
Os11g0242300 64 6e-11
>Os03g0117900 Similar to Transcription factor
Length = 200
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/200 (74%), Positives = 148/200 (74%)
Query: 1 MDRDESLGTQPLTGRRVRADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEMX 60
MDRDESLGTQPLTGRRVRADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEM
Sbjct: 1 MDRDESLGTQPLTGRRVRADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEMA 60
Query: 61 XXXXXXXXXXXXXXXXXXNFPGTATSRPAPASGSPDDIRXXXXXXXXMIGSGHRGNQXXX 120
NFPGTATSRPAPASGSPDDIR MIGSGHRGNQ
Sbjct: 61 AAAYDAAALALRGADAALNFPGTATSRPAPASGSPDDIRAAAAAAAAMIGSGHRGNQRAA 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXQKRVVDEDDVFEMPRLLVSMAEGLMMSPPRLSPSTDGV 180
QKRVVDEDDVFEMPRLLVSMAEGLMMSPPRLSPSTDGV
Sbjct: 121 DASTSRAATAAPEAAVAAGAGDQKRVVDEDDVFEMPRLLVSMAEGLMMSPPRLSPSTDGV 180
Query: 181 GGVSPEDDEDEDGMSLWNHS 200
GGVSPEDDEDEDGMSLWNHS
Sbjct: 181 GGVSPEDDEDEDGMSLWNHS 200
>Os02g0676800 Similar to Dehydration responsive element binding protein 1E
(DREB1E protein)
Length = 261
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 18 RADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXXX 77
R+ +H YRGIR RSGKWVSEIREP K+ RIWLGTYPT EM
Sbjct: 63 RSSGKHAFYRGIRCRSGKWVSEIREPRKARRIWLGTYPTAEMAAAAYDVAARALRGADAV 122
Query: 78 XNFPGTATSRPAPASGSPDDIRXXXXXXXXMIGSGHRGNQXXXXXXXXXXXXXXXXXXXX 137
NFPG SRP PAS SP DIR R +
Sbjct: 123 LNFPGATASRPVPASASPADIRAAAAAAAAAAAHLERPHGPTGTAYPATAAAEHHQQQQQ 182
Query: 138 XXXXXQKRVVD-------------------EDDVFEMPRLLVSMAEGLMMSPPRLSPSTD 178
D E+ +FE+P+LL +MA G+MMSPPRLSP+T
Sbjct: 183 QQYGSGSPAADDVSGYPPMEGGIGNDDFMDEEAIFELPQLLRNMAAGMMMSPPRLSPTTS 242
Query: 179 GVGGVSPEDDEDEDGMSLWNH 199
VSPE E G SLW++
Sbjct: 243 ---DVSPE--PSEAGESLWSY 258
>Os10g0523900
Length = 193
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 15 RRVRADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXX 74
RR RA+TRHPVYRG+R R+GKWVSEIRE K SRIWLGTY TPEM
Sbjct: 25 RRARAETRHPVYRGVRFRAGKWVSEIRELRKPSRIWLGTYATPEMAAAAYDAAALALRGR 84
Query: 75 XXXXNFPGTATSRPAPASGSPDDIRXXXXXXXXMIGSGHRGNQXXXXXXXXXXXXXXXXX 134
NFP A SRPAPAS S DD+R + +
Sbjct: 85 GAALNFPDAARSRPAPASASADDVRAAATAAAAAMAHQEEDDD---------------SR 129
Query: 135 XXXXXXXXQKRVVDEDDVFEMPRLLVSMAEGLMMSPP 171
VVDEDDV EMPRL+VSMAEGLM+SPP
Sbjct: 130 RQLEDGGGGGGVVDEDDVLEMPRLMVSMAEGLMISPP 166
>Os04g0572200
Length = 206
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 18 RADTRHPVYRGIRLRSGKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXXX 77
R+ +HP YRGIR RSGKWVSEIREP K+ RIWLGT+PT EM
Sbjct: 10 RSSGKHPFYRGIRSRSGKWVSEIREPRKARRIWLGTFPTAEMAAVAYDVAARALRGPDAA 69
Query: 78 XNFPGTATSRPAP-ASGSPDDIRXXXXXXXXMI--------------GSGH--RGNQXXX 120
NFP A SR AP AS S DDIR + GS H RG
Sbjct: 70 LNFPDLAASRTAPPASSSADDIRAAAAAAAASLQHDRAGGGIAPAASGSAHQQRGGSSAA 129
Query: 121 XXXXXXXXXXXXXXXXXXXXXXQKRVVDEDDVFEMPRLLVSMAEGLMMSP 170
+ +DE+ +FE P+ L +MA G+MMSP
Sbjct: 130 ARTTAGSGGAQQEGSSGAGAGSHQYFLDEEALFETPQFLRNMAAGMMMSP 179
>Os01g0968800 Similar to Dehydration responsive element binding protein 1F
(DREB1F protein)
Length = 219
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 7/167 (4%)
Query: 13 TGRRVRADTRHPVYRGIRLRSG--KWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXX 70
GR+ +TRHPVYRG+R R+G +WV E+REP +RIWLGTYPTPEM
Sbjct: 34 AGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIA 93
Query: 71 XX-XXXXXXNFPGTATSRPAPASGSPDDIRXXXXXXXXMIGSGHRGNQXXXXXXXXXXXX 129
NFP + ++ P + SP+DIR + +R
Sbjct: 94 LRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAEL----YRRPPPPLALPEDPQEG 149
Query: 130 XXXXXXXXXXXXXQKRVVDEDDVFEMPRLLVSMAEGLMMSPPRLSPS 176
VDED +F+MP L+ MA G+M++PP + S
Sbjct: 150 TSGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAIGRS 196
>Os06g0553700
Length = 263
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 23 HPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXXXXNFP 81
HP YRG+R+R+ GKWVSEIREP K SRIWLGT+PTPEM NFP
Sbjct: 48 HPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALVVKGPAAVLNFP 107
Query: 82 GTATSRPAPASGSPDDIR 99
G A S P PAS +P D++
Sbjct: 108 GAAASLPRPASAAPRDVQ 125
>Os02g0231000
Length = 247
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 22 RHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXXXXNF 80
RHP YRG+R+R+ GKWVSEIREP K SRIWLGT+PTPEM NF
Sbjct: 42 RHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALVVKGPAAVLNF 101
Query: 81 PGTATSRPAPASGSPDDIR 99
P A S P PAS SP D++
Sbjct: 102 PDMAASLPRPASASPRDVQ 120
>Os02g0656600 Similar to Dehydration responsive element binding protein 2B
(DREB2B protein)
Length = 287
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 16 RVRADT-RHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXX 73
R R D RHP YRG+R RS GKWVSEIREP K SRIWLGT+PT EM
Sbjct: 88 RKRGDAGRHPSYRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKG 147
Query: 74 XXXXXNFPGTATSRPAPASGSPDDIR 99
NFP A + P PAS SP DI+
Sbjct: 148 RAAHLNFPSLAHTLPRPASTSPSDIQ 173
>Os10g0560700 Similar to Transcriptional factor TINY
Length = 289
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 15 RRVRADTRHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXX 73
R+ +D +HPVYRG+R+R+ GKWVSEIREP K SRIWLGT+PT +M
Sbjct: 85 RKRSSDGKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTADMAARAHDVAALAIKG 144
Query: 74 XXXXXNFPGTATSRPAPASGSPDDIR 99
NFP A P AS SP D++
Sbjct: 145 RAAHLNFPDLAGVLPRAASASPKDVQ 170
>Os04g0550200 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 217
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 15 RRVRADTRHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXX 73
+R R D RHP YRG+R+RS GKWVSEIREP K SRIWLGT+ T EM
Sbjct: 36 KRPRNDGRHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKG 95
Query: 74 XXXXXNFPGTATSRPAPASGSPDDIR 99
NFP A P PA+ +P D++
Sbjct: 96 RTAHLNFPDLAHLLPRPATAAPKDVQ 121
>Os02g0657000 AP2 domain-containing protein Rap211
Length = 225
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 15 RRVRADTRHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXX 73
+R R D HP YRG+R+RS GKWVSEIREP K SRIWLGT+ T EM
Sbjct: 39 KRPRKDGHHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKG 98
Query: 74 XXXXXNFPGTATSRPAPASGSPDDIR 99
NFP A P PA+ +P D++
Sbjct: 99 RAAHLNFPDLAHELPRPATAAPKDVQ 124
>Os04g0549700 Similar to Dehydration responsive element binding protein 1F
(DREB1F protein)
Length = 284
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 18 RADTRHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXX 76
R+ +HP YRG+R RS GKWVSEIREP K SRIWLGT+PT EM
Sbjct: 110 RSGFKHPSYRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGRNA 169
Query: 77 XXNFPGTATSRPAPASGSPDDIR 99
NFP +A P P S SP DI+
Sbjct: 170 HLNFPDSAHELPRPESTSPADIQ 192
>Os01g0200600 Similar to Avr9/Cf-9 rapidly elicited protein 111A
Length = 228
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 10 QPLTGRRVRADT-------RHPVYRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXX 61
Q + G+R R D YRG+R+R+ GKWVSEIREP K SRIWLGT+P PEM
Sbjct: 23 QQVAGKRKREDVGGGGEQAAAVAYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPCPEMAA 82
Query: 62 XXXXXXXXXXXXXXXXXNFPGTATSRPAPASGSPDDIR 99
NFP A + P PAS +P D++
Sbjct: 83 RAHDVAALSIKGARAVLNFPDLAPALPRPASLAPRDVQ 120
>Os11g0242300
Length = 201
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 26 YRGIRLRS-GKWVSEIREPGKSSRIWLGTYPTPEMXXXXXXXXXXXXXXXXXXXNFPGTA 84
YRG+R R GKWVSEIREPGK +RIWLG++ +PEM NFP A
Sbjct: 21 YRGVRKRKWGKWVSEIREPGKKTRIWLGSFESPEMAAVAHDVAALRLRGRDARLNFPAIA 80
Query: 85 TSRPAPASGSPDDIR 99
P + P D+R
Sbjct: 81 HRFRRPDTAEPGDVR 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,589,563
Number of extensions: 237313
Number of successful extensions: 731
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)