Os10g0560700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional factor TINY.
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Os10g0560700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional factor TINY.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 566.3 | 1.12 | 7.09 | -4.21 | 0.93 | 2.25 | 4 | -9.79 | -0.719 | 3.84 | 24.46 | 1376 | -- | -- |
| 601.74 | 1.14 | 6.8 | -1.6 | 0.919 | 1.73 | 3.28 | -- | -0.108 | 4.22 | 19.69 | 1235 | -- | -- |
| 608.45 | 1.15 | 7.1 | -4.31 | 1.04 | 2.32 | -- | -10.9 | -0.634 | 4.72 | 25.92 | 1347 | -- | -- |
| 634.94 | 1.17 | 6.79 | -1.56 | 0.973 | 1.59 | -- | -- | -0.138 | 5.17 | 21.52 | 1164 | -- | -- |
| 658.18 | 1.19 | 7.06 | -4.03 | -- | 2.5 | -- | -9.65 | -0.559 | -- | 25.35 | 1293 | -- | -- |
| 673.81 | 1.22 | 6.71 | -1.01 | 1.07 | -- | 3.85 | -- | 0.202 | 3.81 | -- | -- | -- | -- |
| 716.55 | 1.25 | 6.72 | -1.06 | 1.12 | -- | -- | -- | 0.18 | 4.27 | -- | -- | -- | -- |
| 680.86 | 1.22 | 6.81 | -1.6 | -- | 1.73 | -- | -- | -0.174 | -- | 21.83 | 1233 | -- | -- |
| 695.42 | 1.23 | 6.73 | -- | 0.966 | 1.22 | -- | -- | 0.0935 | 5.04 | 22.4 | 1164 | -- | -- |
| 783.65 | 1.31 | 6.72 | -1.02 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 746.17 | 1.28 | 6.69 | -- | 1.1 | -- | -- | -- | 0.298 | 4.29 | -- | -- | -- | -- |
| 742.49 | 1.27 | 6.75 | -- | -- | 1.34 | -- | -- | 0.096 | -- | 22.7 | 1222 | -- | -- |
| 810.86 | 1.33 | 6.7 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 499.16 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 2 | 500.64 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 5 | 505.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 18 | 509.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 48 | 513.19 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 55 | 513.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 160 | 519.94 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 173 | 520.63 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 199 | 521.75 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 201 | 521.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 256 | 524.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 327 | 527.02 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 475 | 532.49 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 484 | 532.73 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 503 | 533.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 531 | 533.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 559 | 534.35 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 580 | 534.93 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 592 | 535.21 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 654 | 536.39 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 684 | 536.93 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 750 | 537.80 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 771 | 538.36 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 782 | 538.55 | wind | 5 | 14400 | > th | dose dependent | sin | 0 | NA |
| 890 | 540.28 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 967 | 541.20 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 2 |