Os03g0117900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor.
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Os03g0117900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.89 | 0.575 | 5.44 | -2.85 | 0.948 | 1.23 | -0.193 | 0.788 | -0.876 | 16.4 | 20.7 | 1560 | -- | -- |
| 150.78 | 0.572 | 5.46 | -3.02 | 0.937 | 1.25 | -0.296 | -- | -0.88 | 16.4 | 20.91 | 1586 | -- | -- |
| 149.97 | 0.57 | 5.44 | -2.85 | 0.968 | 1.21 | -- | 0.765 | -0.877 | 16.4 | 20.7 | 1519 | -- | -- |
| 150.37 | 0.571 | 5.47 | -3.07 | 0.975 | 1.24 | -- | -- | -0.933 | 16.3 | 21.22 | 1504 | -- | -- |
| 158.9 | 0.587 | 5.43 | -2.93 | -- | 1.93 | -- | 0.827 | -0.907 | -- | 18.61 | 251 | -- | -- |
| 203.03 | 0.668 | 5.4 | -2.61 | 0.927 | -- | -0.342 | -- | -0.64 | 16.6 | -- | -- | -- | -- |
| 203.31 | 0.668 | 5.4 | -2.62 | 0.924 | -- | -- | -- | -0.642 | 16.5 | -- | -- | -- | -- |
| 158.2 | 0.586 | 5.47 | -3.1 | -- | 2 | -- | -- | -0.988 | -- | 18.8 | 259 | -- | -- |
| 374.28 | 0.901 | 5.35 | -- | 0.706 | 0.708 | -- | -- | -0.454 | 15.9 | 21.4 | 401 | -- | -- |
| 248.87 | 0.737 | 5.39 | -2.65 | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
| 383.75 | 0.916 | 5.34 | -- | 0.973 | -- | -- | -- | -0.35 | 16.4 | -- | -- | -- | -- |
| 391.5 | 0.922 | 5.35 | -- | -- | 1.22 | -- | -- | -0.465 | -- | 24.31 | 252 | -- | -- |
| 434.45 | 0.973 | 5.33 | -- | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.87 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 2 | 144.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 14 | 146.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 15 | 147.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 20 | 147.40 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 29 | 147.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 33 | 148.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 35 | 148.17 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 55 | 148.80 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 60 | 149.00 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 68 | 149.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 69 | 149.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 20 |
| 70 | 149.21 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 71 | 149.21 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 83 | 149.45 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 104 | 149.88 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 109 | 149.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 120 | 149.97 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 128 | 149.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 129 | 150.00 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 154 | 150.08 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 220 | 150.22 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 221 | 150.22 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 253 | 150.30 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 285 | 150.40 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 352 | 150.74 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 366 | 150.82 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 379 | 150.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 388 | 150.90 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 393 | 150.94 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 398 | 150.98 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 410 | 151.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 439 | 151.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 450 | 151.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 457 | 151.28 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 468 | 151.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 479 | 151.36 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 499 | 151.45 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 558 | 151.77 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 560 | 151.77 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 667 | 152.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 668 | 152.08 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 669 | 152.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 680 | 152.10 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 704 | 152.16 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 740 | 152.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 752 | 152.22 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 994 | 152.69 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 10 |