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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0656600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dehydration responsive element binding protein 2B (DREB2B protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0501) R2 : 0.818
β1 : -1.07 (0.183) R2dD : 0.0144 R2D : -0.00689
β2 : 4.18 (0.169) R2dC : 0.408 R2C : 0.632
β3 : -2.04 (0.167) R2dE : 0.1 R2E : 0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.3 (0.107) R2dN8 : 0.0785 R2N8 : 0.0425
σ : 0.936
deviance : 404.26
__
_____
C
peak time of C : 6.02
E
wheather : wind
threshold : 7.594
memory length : 250
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.07
open length of G : 21

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
393.15 0.932 6.58 -0.891 4.21 -1.95 0.386 -2.11 -1.29 6.02 6.955 272 4 21
396.71 0.928 6.58 -1.04 4.17 -1.96 1.76 -- -1.27 6.03 7.703 258 4.03 21
393.4 0.924 6.58 -0.887 4.21 -1.96 -- -2.28 -1.28 6.02 6.9 271 4 21
404.26 0.936 6.58 -1.07 4.18 -2.04 -- -- -1.3 6.02 7.594 250 4.07 21
527.55 1.07 6.82 -1.22 -- -5.07 -- -2.65 -1.39 -- 37.41 652 3.23 18.1
512.18 1.06 6.56 -1.19 5.48 -- 2.64 -- -1.35 5.75 -- -- -- --
529.21 1.08 6.57 -1.17 5.49 -- -- -- -1.36 5.74 -- -- -- --
460.19 0.999 6.68 -1.25 -- -5.87 -- -- -1.38 -- 60.33 542 5.56 15
431.52 0.967 6.57 -- 4.25 -2.02 -- -- -1.22 6.07 6.9 264 3.91 21
2093.17 2.14 6.65 -1 -- -- -- -- -1.23 -- -- -- -- --
565.42 1.11 6.54 -- 5.47 -- -- -- -1.23 5.75 -- -- -- --
501.63 1.04 6.65 -- -- -5.83 -- -- -1.24 -- 62.88 541 5.64 14.8
2119.56 2.15 6.63 -- -- -- -- -- -1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 393.20 wind 7.0 270 < th dose independent rect. 4 21
3 399.36 wind 7.0 90 < th dose independent rect. 6 19
4 399.39 temperature 15.0 270 > th dose independent rect. 4 21
6 400.90 wind 7.0 30 < th dose independent rect. 6 21
7 400.97 precipitation 0.1 270 < th dose independent rect. 4 21
8 400.97 precipitation 0.1 270 < th dose dependent rect. 4 21
13 402.37 precipitation 0.1 270 < th dose independent rect. 1 3
14 402.37 precipitation 0.1 270 < th dose dependent rect. 1 3
15 402.47 temperature 10.0 270 > th dose independent rect. 1 3
17 402.47 temperature 30.0 270 < th dose independent rect. 1 3
18 402.47 humidity 50.0 270 > th dose independent rect. 1 3
21 402.47 atmosphere 995.0 270 > th dose independent rect. 1 3
22 402.47 atmosphere 1010.0 270 < th dose independent rect. 1 3
24 402.47 radiation 1.0 270 < th dose independent rect. 1 3
30 402.47 radiation 1.0 270 < th dose dependent rect. 1 3
35 402.57 wind 9.0 270 < th dose independent rect. 1 3
37 403.37 temperature 10.0 10 > th dose dependent rect. 6 21
39 403.53 temperature 10.0 270 > th dose dependent rect. 4 7
44 404.19 temperature 15.0 90 > th dose independent rect. 6 19
46 404.90 temperature 10.0 90 > th dose dependent rect. 6 19
48 405.00 wind 9.0 270 < th dose dependent rect. 5 19
57 407.21 precipitation 0.1 270 < th dose independent rect. 5 19
58 407.21 precipitation 0.1 270 < th dose dependent rect. 5 19
68 407.74 humidity 50.0 270 > th dose dependent rect. 1 3
69 407.80 radiation 10.0 90 < th dose independent rect. 1 5
93 408.86 radiation 1.0 270 < th dose dependent rect. 24 5
94 408.86 wind 9.0 270 < th dose dependent rect. 4 21
95 408.87 precipitation 0.1 270 < th dose independent rect. 24 5
96 408.87 precipitation 0.1 270 < th dose dependent rect. 24 5
108 409.10 atmosphere 1010.0 270 < th dose independent rect. 24 5
110 409.11 temperature 10.0 270 > th dose independent rect. 24 5
111 409.11 temperature 30.0 270 < th dose independent rect. 24 5
112 409.11 humidity 50.0 270 > th dose independent rect. 24 5
115 409.11 atmosphere 995.0 270 > th dose independent rect. 24 5
136 409.18 wind 9.0 270 < th dose independent rect. 24 5
142 409.38 radiation 10.0 10 < th dose independent rect. 3 3
143 409.39 wind 9.0 270 < th dose dependent rect. 1 3
145 409.68 wind 9.0 10 < th dose dependent rect. 6 21
147 409.72 atmosphere 1015.0 270 < th dose dependent rect. 1 3
148 409.76 wind 1.0 270 > th dose independent rect. 1 3
160 410.50 temperature 15.0 10 > th dose independent rect. 6 21
166 410.95 wind 9.0 10 < th dose independent rect. 3 3
167 410.95 temperature 10.0 10 > th dose independent rect. 3 3
169 410.95 temperature 30.0 10 < th dose independent rect. 3 3
170 410.95 humidity 50.0 10 > th dose independent rect. 3 3
173 410.95 atmosphere 995.0 10 > th dose independent rect. 3 3
174 410.95 atmosphere 1010.0 10 < th dose independent rect. 3 3
191 411.89 radiation 40.0 10 < th dose dependent rect. 3 3
207 411.97 precipitation 0.1 10 < th dose independent rect. 6 21
208 411.97 precipitation 0.1 10 < th dose dependent rect. 6 21
209 412.06 humidity 50.0 10 > th dose independent rect. 6 21
210 412.08 humidity 50.0 90 > th dose dependent rect. 1 5
211 412.14 precipitation 0.1 30 < th dose independent rect. 3 3
212 412.14 precipitation 0.1 30 < th dose dependent rect. 3 3
219 412.36 humidity 50.0 10 > th dose dependent rect. 3 3
221 412.43 radiation 1.0 270 < th dose dependent rect. 24 11
270 412.87 wind 7.0 270 < th dose independent rect. 19 14
278 413.13 wind 9.0 10 < th dose dependent rect. 3 3
291 413.58 temperature 10.0 270 > th dose dependent rect. 1 3
306 414.26 wind 7.0 270 < th dose independent rect. 4 10
362 415.88 temperature 10.0 10 > th dose dependent rect. 3 3
367 416.01 temperature 10.0 270 > th dose dependent rect. 19 15
372 416.13 atmosphere 1015.0 270 < th dose dependent rect. 24 5
373 416.17 wind 7.0 90 < th dose independent rect. 6 9
374 416.17 temperature 10.0 10 > th dose dependent rect. 6 8
378 416.31 wind 9.0 90 < th dose dependent rect. 1 5
399 416.73 radiation 1.0 270 < th dose independent rect. 24 11
422 417.50 temperature 30.0 270 < th dose dependent rect. 1 2
469 418.72 humidity 50.0 90 > th dose independent rect. 6 19
470 418.72 atmosphere 1015.0 90 < th dose independent rect. 6 19
487 418.75 wind 9.0 270 < th dose dependent rect. 5 8
488 418.76 atmosphere 995.0 90 > th dose independent rect. 6 19
508 418.94 wind 9.0 1440 < th dose independent rect. 2 5
509 418.94 temperature 10.0 1440 > th dose independent rect. 2 5
512 418.94 temperature 30.0 1440 < th dose independent rect. 2 5
516 418.94 humidity 50.0 1440 > th dose independent rect. 2 5
521 418.94 atmosphere 995.0 1440 > th dose independent rect. 2 5
522 418.94 radiation 40.0 1440 < th dose independent rect. 2 5
526 418.94 temperature 10.0 1440 > th dose independent rect. 7 19
533 419.04 atmosphere 1015.0 1440 < th dose independent rect. 3 4
592 419.49 wind 1.0 270 > th dose independent rect. 4 20
598 419.62 atmosphere 995.0 10 > th dose independent rect. 6 21
690 420.92 atmosphere 995.0 270 > th dose independent rect. 4 21
768 421.72 atmosphere 1015.0 10 < th dose dependent rect. 3 3
770 421.74 temperature 30.0 90 < th dose dependent rect. 1 5
791 422.11 atmosphere 1015.0 90 < th dose dependent rect. 3 2
799 422.23 atmosphere 1015.0 10 < th dose independent rect. 6 21
846 422.79 radiation 40.0 270 < th dose independent rect. 19 14
933 424.03 wind 5.0 270 < th dose independent rect. 5 6
934 424.07 precipitation 0.1 270 < th dose independent rect. 17 7
935 424.07 precipitation 0.1 270 < th dose dependent rect. 17 7
976 424.36 radiation 1.0 270 < th dose dependent sin 8 NA
979 424.37 atmosphere 1015.0 270 < th dose independent rect. 4 21