Os01g0200600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 111A.
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Os01g0200600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 111A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.24 | 0.655 | 4.5 | -0.0167 | 0.963 | 1.14 | 0.737 | 0.296 | -0.493 | 10.7 | 22.5 | 1931 | -- | -- |
| 194.45 | 0.649 | 4.49 | 0.0874 | 0.959 | 1.14 | 0.749 | -- | -0.465 | 10.7 | 22.5 | 1946 | -- | -- |
| 196.45 | 0.653 | 4.5 | -0.00924 | 0.95 | 1.14 | -- | 0.366 | -0.493 | 10.7 | 22.5 | 1982 | -- | -- |
| 196.74 | 0.653 | 4.49 | 0.12 | 0.948 | 1.14 | -- | -- | -0.462 | 10.7 | 22.48 | 1983 | -- | -- |
| 231.22 | 0.708 | 4.53 | -0.136 | -- | 1.3 | -- | 0.691 | -0.494 | -- | 22.3 | 869 | -- | -- |
| 245.36 | 0.734 | 4.58 | -0.353 | 1.02 | -- | 0.721 | -- | -0.879 | 10.7 | -- | -- | -- | -- |
| 247.52 | 0.737 | 4.58 | -0.324 | 1.01 | -- | -- | -- | -0.877 | 10.7 | -- | -- | -- | -- |
| 232.19 | 0.71 | 4.51 | 0.0862 | -- | 1.3 | -- | -- | -0.442 | -- | 22.27 | 844 | -- | -- |
| 197.08 | 0.654 | 4.49 | -- | 0.944 | 1.11 | -- | -- | -0.472 | 10.7 | 22.6 | 2000 | -- | -- |
| 310.73 | 0.824 | 4.61 | -0.344 | -- | -- | -- | -- | -0.882 | -- | -- | -- | -- | -- |
| 250.29 | 0.74 | 4.58 | -- | 1.01 | -- | -- | -- | -0.841 | 10.7 | -- | -- | -- | -- |
| 232.38 | 0.71 | 4.51 | -- | -- | 1.29 | -- | -- | -0.457 | -- | 22.29 | 844 | -- | -- |
| 313.85 | 0.827 | 4.6 | -- | -- | -- | -- | -- | -0.844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.19 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 191.39 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 4 | 191.44 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 7 | 191.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 11 | 192.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 12 | 192.27 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 14 | 192.30 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 25 | 193.16 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 26 | 193.32 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 27 | 193.65 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 30 | 194.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 33 | 194.12 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 36 | 194.27 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 49 | 194.54 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 65 | 194.91 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 132 | 195.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 146 | 196.10 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 172 | 196.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 178 | 196.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 179 | 196.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 184 | 196.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 188 | 196.83 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 216 | 197.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 223 | 197.22 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 246 | 197.53 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 305 | 198.20 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 357 | 198.59 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 405 | 198.90 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 439 | 199.12 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 523 | 199.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 530 | 199.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 533 | 199.73 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 543 | 199.76 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 687 | 200.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 709 | 200.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 973 | 200.96 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 13 |