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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0523900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.32 (0.0368) R2 : 0.281
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.954 (0.0958) R2dC : 0.157 R2C : 0.149
β3 : 1.24 (0.183) R2dE : 0.0728 R2E : 0.0398
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.468 (0.0779) R2dN8 : 0.0743 R2N8 : 0.0476
σ : 0.691
deviance : 220.04
__
_____
C
peak time of C : 17
E
wheather : humidity
threshold : 68.95
memory length : 5296
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.56 0.679 5.32 0.261 0.995 1.03 0.226 2.86 -0.429 17.1 68 5375 -- --
219.28 0.69 5.31 0.186 0.969 1.26 0.227 -- -0.441 17 68.5 5296 -- --
208.59 0.673 5.32 0.258 0.983 1.04 -- 2.88 -0.428 17.1 68 5313 -- --
219.36 0.69 5.32 0.163 0.961 1.25 -- -- -0.452 17 68.8 5302 -- --
250.18 0.737 5.35 0.307 -- 1.27 -- 2.6 -0.574 -- 70 6360 -- --
240.48 0.727 5.31 0.131 0.983 -- 0.225 -- -0.395 17.5 -- -- -- --
240.6 0.726 5.31 0.131 0.984 -- -- -- -0.394 17.5 -- -- -- --
257.54 0.747 5.34 0.189 -- 1.39 -- -- -0.637 -- 70.35 6339 -- --
220.04 0.691 5.32 -- 0.954 1.24 -- -- -0.468 17 68.95 5296 -- --
290.99 0.797 5.29 0.0981 -- -- -- -- -0.418 -- -- -- -- --
241.05 0.726 5.31 -- 0.982 -- -- -- -0.408 17.5 -- -- -- --
257.5 0.747 5.34 -- -- 1.43 -- -- -0.624 -- 70.71 4900 -- --
291.25 0.797 5.29 -- -- -- -- -- -0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.09 humidity 80.0 1440 < th dose independent rect. 8 4
7 203.25 humidity 90.0 14400 > th dose dependent rect. 9 1
11 203.54 humidity 80.0 1440 > th dose independent rect. 7 5
23 204.23 humidity 70.0 1440 > th dose dependent rect. 9 1
26 204.45 humidity 90.0 14400 > th dose dependent rect. 7 3
27 204.46 humidity 70.0 1440 > th dose dependent rect. 9 3
31 204.58 wind 3.0 14400 < th dose independent rect. 24 7
37 205.07 humidity 80.0 1440 < th dose independent rect. 11 1
42 205.17 wind 3.0 14400 > th dose independent rect. 24 7
44 205.27 wind 3.0 14400 < th dose dependent rect. 4 3
52 205.50 humidity 90.0 14400 > th dose independent rect. 7 1
58 205.71 wind 3.0 14400 > th dose independent rect. 5 1
59 205.72 wind 3.0 14400 < th dose independent rect. 5 1
63 205.77 precipitation 0.1 14400 < th dose independent rect. 15 1
64 205.77 precipitation 0.1 14400 < th dose dependent rect. 15 1
69 205.82 precipitation 0.1 14400 > th dose independent rect. 15 1
72 205.82 precipitation 0.1 14400 > th dose dependent rect. 15 1
78 205.98 humidity 90.0 14400 > th dose independent rect. 7 3
100 206.35 wind 5.0 14400 < th dose dependent rect. 24 7
116 206.53 precipitation 0.1 4320 > th dose independent rect. 4 6
124 206.63 precipitation 0.1 4320 < th dose independent rect. 4 6
125 206.63 precipitation 0.1 4320 < th dose dependent rect. 4 6
152 206.84 precipitation 0.1 14400 > th dose independent rect. 14 3
154 206.84 precipitation 0.1 14400 > th dose independent rect. 4 13
157 206.85 precipitation 0.1 14400 < th dose independent rect. 14 3
159 206.85 precipitation 0.1 14400 < th dose dependent rect. 14 3
163 206.88 precipitation 0.1 4320 > th dose dependent rect. 4 6
165 206.90 wind 1.0 14400 > th dose dependent rect. 5 1
166 206.91 wind 1.0 14400 > th dose dependent rect. 24 7
171 206.97 precipitation 0.1 14400 < th dose independent rect. 4 13
172 206.97 wind 5.0 14400 < th dose dependent rect. 5 1
173 206.97 precipitation 0.1 14400 < th dose dependent rect. 4 13
176 207.00 humidity 90.0 14400 > th dose independent rect. 9 1
182 207.08 precipitation 0.1 4320 < th dose independent rect. 4 3
183 207.08 precipitation 0.1 4320 < th dose dependent rect. 4 3
196 207.16 precipitation 0.1 1440 > th dose independent rect. 5 8
207 207.23 precipitation 0.1 14400 > th dose dependent rect. 14 3
232 207.39 precipitation 0.1 1440 > th dose dependent rect. 5 8
237 207.41 precipitation 0.1 14400 > th dose dependent rect. 4 13
252 207.50 wind 1.0 14400 > th dose dependent rect. 4 3
304 207.78 humidity 90.0 14400 > th dose dependent rect. 7 10
336 207.99 humidity 90.0 14400 < th dose independent rect. 7 2
341 208.01 precipitation 0.1 14400 < th dose independent rect. 18 1
343 208.01 precipitation 0.1 14400 < th dose dependent rect. 18 1
351 208.04 precipitation 0.1 14400 > th dose dependent rect. 18 1
357 208.10 precipitation 0.1 14400 < th dose independent rect. 3 16
359 208.10 precipitation 0.1 14400 < th dose dependent rect. 3 16
360 208.11 precipitation 0.1 14400 > th dose independent rect. 3 16
383 208.19 precipitation 0.1 14400 > th dose independent rect. 18 1
388 208.21 precipitation 0.1 4320 < th dose independent rect. 1 16
392 208.21 precipitation 0.1 4320 < th dose dependent rect. 1 16
409 208.25 precipitation 0.1 4320 > th dose independent rect. 1 16
446 208.43 wind 9.0 14400 < th dose independent rect. 10 1
476 208.61 precipitation 0.1 14400 > th dose independent rect. 7 10
503 208.77 precipitation 0.1 14400 > th dose independent rect. 9 8
512 208.80 wind 1.0 14400 < th dose independent rect. 4 9
526 208.83 precipitation 0.1 14400 > th dose independent sin 2 NA
531 208.84 humidity 80.0 14400 > th dose dependent rect. 9 5
552 208.90 precipitation 0.1 14400 < th dose independent sin 2 NA
553 208.90 precipitation 0.1 14400 < th dose independent rect. 7 10
554 208.90 precipitation 0.1 14400 < th dose dependent sin 2 NA
555 208.90 wind 9.0 14400 < th dose dependent rect. 1 1
558 208.90 precipitation 0.1 14400 < th dose dependent rect. 7 10
561 208.91 humidity 90.0 14400 > th dose independent rect. 7 7
569 208.94 precipitation 0.1 4320 > th dose independent rect. 3 10
583 208.98 precipitation 0.1 14400 < th dose independent rect. 9 8
584 208.98 precipitation 0.1 14400 < th dose dependent rect. 9 8
626 209.11 precipitation 0.1 14400 > th dose independent rect. 12 5
634 209.12 humidity 90.0 4320 < th dose dependent rect. 9 1
658 209.23 wind 1.0 14400 > th dose dependent rect. 1 1
676 209.28 wind 1.0 4320 > th dose independent rect. 17 2
715 209.44 precipitation 0.1 4320 > th dose dependent rect. 1 16
735 209.56 wind 3.0 14400 < th dose dependent sin 7 NA
742 209.60 wind 9.0 14400 < th dose independent rect. 6 5
762 209.67 humidity 90.0 14400 > th dose dependent rect. 16 1
782 209.74 precipitation 0.1 14400 > th dose dependent rect. 9 8
811 209.82 precipitation 0.1 14400 > th dose dependent sin 3 NA
909 210.21 precipitation 0.1 14400 < th dose independent rect. 14 6
910 210.21 precipitation 0.1 14400 < th dose dependent rect. 14 6
912 210.22 precipitation 0.1 14400 > th dose independent rect. 9 11
914 210.23 precipitation 0.1 14400 < th dose independent rect. 9 11
917 210.23 precipitation 0.1 14400 < th dose dependent rect. 9 11
931 210.27 precipitation 0.1 14400 > th dose independent rect. 14 6
936 210.29 wind 3.0 14400 < th dose independent sin 8 NA
978 210.42 humidity 80.0 14400 < th dose independent rect. 10 1
988 210.43 humidity 80.0 4320 < th dose dependent rect. 22 14