Os04g0550200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os04g0550200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 382.75 | 0.919 | 8.54 | -3.44 | 1.64 | 2.8 | -2.07 | -2.61 | -0.212 | 12.8 | 28.65 | 1196 | -- | -- |
| 382.37 | 0.911 | 8.5 | -3.03 | 1.71 | 2.71 | -2.15 | -- | -0.272 | 12.7 | 27.9 | 1200 | -- | -- |
| 397.42 | 0.928 | 8.57 | -3.38 | 1.71 | 2.85 | -- | -1.21 | -0.457 | 12.7 | 27.16 | 1192 | -- | -- |
| 397.74 | 0.929 | 8.55 | -3.1 | 1.7 | 2.72 | -- | -- | -0.423 | 12.7 | 27.12 | 1192 | -- | -- |
| 544.86 | 1.09 | 8.64 | -3.63 | -- | 2.63 | -- | -1.96 | -0.6 | -- | 26.92 | 1512 | -- | -- |
| 666.16 | 1.21 | 8.54 | -2.23 | 1.21 | -- | -2.67 | -- | -0.434 | 12.8 | -- | -- | -- | -- |
| 696.14 | 1.24 | 8.55 | -2.33 | 1.22 | -- | -- | -- | -0.449 | 12.7 | -- | -- | -- | -- |
| 546.01 | 1.09 | 8.58 | -3.13 | -- | 2.41 | -- | -- | -0.518 | -- | 26.8 | 1510 | -- | -- |
| 629.43 | 1.17 | 8.38 | -- | 1.63 | 2.07 | -- | -- | 0.28 | 12.8 | 30.26 | 1175 | -- | -- |
| 788.72 | 1.31 | 8.57 | -2.37 | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
| 838.69 | 1.35 | 8.49 | -- | 1.25 | -- | -- | -- | -0.19 | 12.8 | -- | -- | -- | -- |
| 778.87 | 1.3 | 8.43 | -- | -- | 1.74 | -- | -- | 0.177 | -- | 30.6 | 1286 | -- | -- |
| 936.78 | 1.43 | 8.51 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 393.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 398.14 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 4 | 399.30 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 7 | 401.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 8 | 401.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 51 | 402.03 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 75 | 402.47 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 78 | 402.61 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 98 | 402.94 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 198 | 403.26 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 201 | 403.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 253 | 405.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 254 | 405.34 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 259 | 405.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 291 | 405.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 295 | 406.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 299 | 406.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 312 | 407.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 316 | 407.46 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 317 | 407.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 321 | 407.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 323 | 407.83 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 336 | 408.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 341 | 408.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 342 | 408.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 348 | 408.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 357 | 408.50 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 363 | 408.68 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 379 | 408.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 386 | 408.92 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 395 | 408.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 415 | 408.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 426 | 409.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 466 | 410.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 473 | 410.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 474 | 410.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 478 | 410.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 490 | 410.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 510 | 410.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 524 | 410.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 526 | 410.57 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 554 | 410.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 588 | 411.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 619 | 411.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 621 | 411.34 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 627 | 411.39 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 642 | 411.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 678 | 411.76 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 822 | 411.98 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 885 | 412.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 898 | 412.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 907 | 412.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 918 | 412.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 997 | 413.23 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |