Os02g0657000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AP2 domain-containing protein Rap211.
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Os02g0657000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AP2 domain-containing protein Rap211.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 531.55 | 1.08 | 6.17 | -1.66 | 2.85 | -1.43 | 0.808 | 3.53 | -0.836 | 6.55 | 20.4 | 946 | -- | -- |
| 577.92 | 1.12 | 6.23 | -1.71 | 2.88 | -1.68 | 1.33 | -- | -0.892 | 6.49 | 20.2 | 939 | -- | -- |
| 532.43 | 1.07 | 6.16 | -1.61 | 2.9 | -1.42 | -- | 3.73 | -0.828 | 6.6 | 20.29 | 1060 | -- | -- |
| 564.32 | 1.11 | 6.27 | -2.07 | 2.82 | -2.1 | -- | -- | -0.943 | 6.5 | 19.91 | 937 | -- | -- |
| 923.4 | 1.42 | 6.23 | -1.17 | -- | -1.84 | -- | 3.66 | -0.65 | -- | 20.8 | 583 | -- | -- |
| 654.33 | 1.2 | 6.35 | -3 | 2.89 | -- | 0.394 | -- | -1.37 | 6.84 | -- | -- | -- | -- |
| 654.71 | 1.2 | 6.35 | -2.99 | 2.9 | -- | -- | -- | -1.37 | 6.86 | -- | -- | -- | -- |
| 934.28 | 1.42 | 6.35 | -1.88 | -- | -2.39 | -- | -- | -0.813 | -- | 19.7 | 571 | -- | -- |
| 663.9 | 1.2 | 6.24 | -- | 2.97 | -2.99 | -- | -- | -0.7 | 6.51 | 19.4 | 1080 | -- | -- |
| 1093.85 | 1.55 | 6.41 | -2.93 | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
| 890.99 | 1.4 | 6.28 | -- | 2.86 | -- | -- | -- | -1.04 | 6.92 | -- | -- | -- | -- |
| 1016.05 | 1.48 | 6.24 | -- | -- | -3.51 | -- | -- | -0.54 | -- | 19.41 | 563 | -- | -- |
| 1320.55 | 1.7 | 6.34 | -- | -- | -- | -- | -- | -0.993 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 525.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 3 | 526.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 4 | 526.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 527.16 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 27 | 529.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 31 | 529.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 34 | 529.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 35 | 529.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 39 | 530.11 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 21 |
| 42 | 530.30 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 17 |
| 45 | 530.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 46 | 530.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 81 | 531.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 85 | 531.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 18 |
| 89 | 531.94 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 99 | 532.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 110 | 532.39 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 112 | 532.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 125 | 532.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 143 | 532.69 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 173 | 532.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 202 | 533.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 205 | 533.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 208 | 533.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 225 | 533.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 252 | 533.75 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 22 |
| 261 | 533.83 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 274 | 533.97 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 277 | 533.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 285 | 534.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 310 | 534.33 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 318 | 534.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 323 | 534.41 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 21 |
| 330 | 534.48 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 347 | 534.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 400 | 535.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 412 | 535.31 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 21 |
| 475 | 536.13 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 483 | 536.19 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 500 | 536.33 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 531 | 536.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 543 | 536.87 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 566 | 537.14 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 573 | 537.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 584 | 537.32 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 606 | 537.64 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 616 | 537.76 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 23 |
| 622 | 537.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 667 | 538.48 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 709 | 538.96 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 739 | 539.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 747 | 539.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 756 | 539.53 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 784 | 539.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 794 | 539.98 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 23 |
| 810 | 540.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 811 | 540.15 | humidity | 80 | 14400 | > th | dose dependent | rect. | 24 | 8 |
| 817 | 540.18 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 19 |
| 881 | 540.73 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 890 | 540.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 907 | 541.04 | temperature | 20 | 720 | < th | dose independent | rect. | 6 | 23 |
| 944 | 541.36 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |