BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0116700 Os03g0116700|AK106276
(297 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0116700 Cyclin-like F-box domain containing protein 532 e-151
Os02g0675800 Cyclin-like F-box domain containing protein 358 4e-99
Os04g0571300 Cyclin-like F-box domain containing protein 355 3e-98
Os09g0525300 Cyclin-like F-box domain containing protein 323 1e-88
Os02g0224900 Conserved hypothetical protein 178 4e-45
Os10g0522400 Cyclin-like F-box domain containing protein 177 6e-45
Os02g0813300 Cyclin-like F-box domain containing protein 76 4e-14
Os02g0812500 Cyclin-like F-box domain containing protein 74 2e-13
Os08g0150700 Cyclin-like F-box domain containing protein 67 2e-11
Os12g0131600 Cyclin-like F-box domain containing protein 65 6e-11
Os02g0812600 Cyclin-like F-box domain containing protein 65 7e-11
>Os03g0116700 Cyclin-like F-box domain containing protein
Length = 297
Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/297 (88%), Positives = 262/297 (88%)
Query: 1 MGAGVSDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLLHLDAPEICRLARLNRAFRGAAAA 60
MGAGVSDL VLLHLDAPEICRLARLNRAFRGAAAA
Sbjct: 1 MGAGVSDLAAGMEAVGKVAGGAGLGELPELCAAEVLLHLDAPEICRLARLNRAFRGAAAA 60
Query: 61 DFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSVMGKKEVYARLAKAVPFDGGKKELWLE 120
DFVWEAKLPENYGYLLDFVDGAM SVMGKKEVYARLAKAVPFDGGKKELWLE
Sbjct: 61 DFVWEAKLPENYGYLLDFVDGAMEGGGGGRERSVMGKKEVYARLAKAVPFDGGKKELWLE 120
Query: 121 KSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHSVAYLQQIWWFEVVGELEFCFPA 180
KSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHSVAYLQQIWWFEVVGELEFCFPA
Sbjct: 121 KSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHSVAYLQQIWWFEVVGELEFCFPA 180
Query: 181 GTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKKPVRFQLSTSDGQHALSQCYLDEPGSW 240
GTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKKPVRFQLSTSDGQHALSQCYLDEPGSW
Sbjct: 181 GTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKKPVRFQLSTSDGQHALSQCYLDEPGSW 240
Query: 241 ILYHVGDFVASTTEQPIKLKFSLAQIDCTHTKGGLCVDSVLIYPKGFQQEKVISSQK 297
ILYHVGDFVASTTEQPIKLKFSLAQIDCTHTKGGLCVDSVLIYPKGFQQEKVISSQK
Sbjct: 241 ILYHVGDFVASTTEQPIKLKFSLAQIDCTHTKGGLCVDSVLIYPKGFQQEKVISSQK 297
>Os02g0675800 Cyclin-like F-box domain containing protein
Length = 297
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 167/262 (63%), Positives = 205/262 (78%), Gaps = 5/262 (1%)
Query: 35 VLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXX----- 89
VLL+LD PEIC++ARLNRAFRGAA+AD VW KLP NY YLL F A
Sbjct: 30 VLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLAFAAAADDEGGDGGHGNG 89
Query: 90 XXXSVMGKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHM 149
S KK+++ARL + PFD G KE W++K+KGG+C+++SSK++VITGIDDRRYWS +
Sbjct: 90 KRSSPSSKKDIFARLCRPTPFDFGNKEFWIDKNKGGICLSISSKAMVITGIDDRRYWSQL 149
Query: 150 PTTESRFHSVAYLQQIWWFEVVGELEFCFPAGTYSLYFRLHLGKASTRFGRRVCSSEQIH 209
T ESRFH +AYLQQIWW EV GEL+FCFPAG+YS++FRLHLG+ R GRR+C +EQ+H
Sbjct: 150 ATEESRFHHIAYLQQIWWLEVDGELDFCFPAGSYSIFFRLHLGRPYRRMGRRICGTEQVH 209
Query: 210 GWDKKPVRFQLSTSDGQHALSQCYLDEPGSWILYHVGDFVASTTEQPIKLKFSLAQIDCT 269
GW+ KP RFQLSTSD QHA S+ YL++ GSWILYHVGDFV +++ +KLKFS+ QIDCT
Sbjct: 210 GWEAKPTRFQLSTSDEQHATSEYYLEQEGSWILYHVGDFVVLNSDELMKLKFSMLQIDCT 269
Query: 270 HTKGGLCVDSVLIYPKGFQQEK 291
HTKGGLCVDSVLIYPKG++ EK
Sbjct: 270 HTKGGLCVDSVLIYPKGYRHEK 291
>Os04g0571300 Cyclin-like F-box domain containing protein
Length = 304
Score = 355 bits (910), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/265 (64%), Positives = 198/265 (74%), Gaps = 9/265 (3%)
Query: 35 VLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGA---------MXX 85
VLL+LD PEIC++ARLNRAFRGAA+AD VW AKLP NY YL A
Sbjct: 34 VLLYLDPPEICKVARLNRAFRGAASADCVWAAKLPANYRYLAALAAAADDDSGGDGATEG 93
Query: 86 XXXXXXXSVMGKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRY 145
+ M KKE+YARL + PFDGG KE W+EK+KGG+CI++SSK++ ITGIDDRRY
Sbjct: 94 NGSRCSSAAMIKKEIYARLCRPTPFDGGTKEFWMEKNKGGLCISISSKAMAITGIDDRRY 153
Query: 146 WSHMPTTESRFHSVAYLQQIWWFEVVGELEFCFPAGTYSLYFRLHLGKASTRFGRRVCSS 205
WSH+ T ESRFH VAYLQQIWW EV GE++FCFPAG+YSL+FRL LG+ GRRV
Sbjct: 154 WSHLSTEESRFHHVAYLQQIWWLEVAGEIDFCFPAGSYSLFFRLQLGRPHKYMGRRVYGY 213
Query: 206 EQIHGWDKKPVRFQLSTSDGQHALSQCYLDEPGSWILYHVGDFVASTTEQPIKLKFSLAQ 265
E IHGW+ KP RFQLSTSD Q A SQ YL+EPG+WILYHVGDFV S+++Q LKFS+ Q
Sbjct: 214 ESIHGWNIKPTRFQLSTSDDQQATSQYYLNEPGNWILYHVGDFVVSSSDQLTNLKFSMMQ 273
Query: 266 IDCTHTKGGLCVDSVLIYPKGFQQE 290
IDCTHTKGGLCVDSV IYPKG + E
Sbjct: 274 IDCTHTKGGLCVDSVFIYPKGHRHE 298
>Os09g0525300 Cyclin-like F-box domain containing protein
Length = 281
Score = 323 bits (828), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/257 (60%), Positives = 187/257 (72%), Gaps = 11/257 (4%)
Query: 35 VLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSV 94
VL LD PEICR+ARL+R F G VWEAKLP NY LL A+
Sbjct: 30 VLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYARLL-----AVAADGEAAALEA 78
Query: 95 MGKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTES 154
+ KKEVYARL + DGG KE WL+K GGVC+ +SS++L ITGIDDRRYW+ +P ES
Sbjct: 79 IPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIPNDES 138
Query: 155 RFHSVAYLQQIWWFEVVGELEFCFPAGTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKK 214
RFH+VAYL QIWWFEV GE+EFCFP GTYSL+FRLHLG+ R GRRV SSE IHGWD K
Sbjct: 139 RFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIK 198
Query: 215 PVRFQLSTSDGQHALSQCYLDEPGSWILYHVGDFVASTTEQPIKLKFSLAQIDCTHTKGG 274
PVRFQLSTSDGQ A S+CYL +PG WI +HVGDFV ++ + +K++F++ QIDCTHTKGG
Sbjct: 199 PVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHTKGG 258
Query: 275 LCVDSVLIYPKGFQQEK 291
LCVDSV + P+ ++K
Sbjct: 259 LCVDSVAVKPQYLAKKK 275
>Os02g0224900 Conserved hypothetical protein
Length = 237
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 93/110 (84%)
Query: 155 RFHSVAYLQQIWWFEVVGELEFCFPAGTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKK 214
RFHSVAYLQQIW FEVVGE++F F TYSLYFR+HLG+ RFGRR CS+E +HGWD+K
Sbjct: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
Query: 215 PVRFQLSTSDGQHALSQCYLDEPGSWILYHVGDFVASTTEQPIKLKFSLA 264
PVRFQLSTSDGQH+LSQC L EPGSW+LYH G+FV S +Q IKLKFS+A
Sbjct: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVVSKPDQTIKLKFSMA 237
>Os10g0522400 Cyclin-like F-box domain containing protein
Length = 165
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/125 (72%), Positives = 96/125 (76%), Gaps = 4/125 (3%)
Query: 35 VLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSV 94
VLL LDAPEICRLARLN AFRGAA ADFVWEAKLPENY YL+ FV+G
Sbjct: 41 VLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEGGGGGDDGRQLRRR 100
Query: 95 M----GKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMP 150
GKKE+YARLA+ VPFDGG KE WLEKSKG VC+ALSSKSLVITGIDDRRYW H+P
Sbjct: 101 RWRPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGIDDRRYWQHIP 160
Query: 151 TTESR 155
T ESR
Sbjct: 161 TAESR 165
>Os02g0813300 Cyclin-like F-box domain containing protein
Length = 297
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 43 EICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSVMGKKEVYA 102
+ C A ++ AFR AA +D VW + LP N L D DG + + KKE++
Sbjct: 30 DACHAAAVSPAFRAAADSDAVWASFLPRN---LPDLADGELSP-------APASKKELFL 79
Query: 103 RLAKAVPFDGGKK--ELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHSVA 160
RL+ P+ + +WL++ G C LS++SLVI D YW +P T+SRF A
Sbjct: 80 RLSDG-PYLLSDRLMSMWLDRETGAKCYMLSARSLVIIWGDTPHYWRWIPLTDSRFAEGA 138
Query: 161 YLQQIWWFEVVGEL--EFCFPAGTYSLYF 187
L + W E+ G + + P TY+ Y
Sbjct: 139 ELIDVCWLEIRGRIHSKMLSPNSTYAAYM 167
>Os02g0812500 Cyclin-like F-box domain containing protein
Length = 332
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 43 EICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSVMGKKEVYA 102
+ C + ++ AFR AA +D VW++ LP ++ +L D + KK+++A
Sbjct: 30 DACHSSAVSPAFRAAADSDAVWDSFLPPDHAAILARADDGI-----AAAGECASKKDLFA 84
Query: 103 RL-AKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTE-SRFHSVA 160
RL + V D L++ G C+ LS+++L I DD W P SRF VA
Sbjct: 85 RLCGRPVLLDDATMSFGLDRRSGAKCVMLSARALSIAWGDDPSRWRWTPGLPGSRFPEVA 144
Query: 161 YLQQIWWFEVVGELEFCF--PAGTYSLYF 187
L + W E+ G+L+ PA TY+ Y
Sbjct: 145 ELLDVCWLEITGKLQLSLLSPATTYAAYL 173
>Os08g0150700 Cyclin-like F-box domain containing protein
Length = 299
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 36 LLHLDAP-EICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSV 94
++ L +P + CRLA ++ +FR AA +D VW+ LP +Y +
Sbjct: 31 VIALTSPRDACRLAAVSPSFRAAAESDAVWDRFLPPDYRAIAPLPPPPATAAASGGKRM- 89
Query: 95 MGKKEVYARLA-KAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTE 153
KK VY L K VP D G +WLEK G C AL ++ L + D W P
Sbjct: 90 --KKGVYLGLCDKPVPVDDGSMMVWLEKESGAKCFALPARKLSLPWEDGEFSWRWTPHPL 147
Query: 154 SRFHSVAYLQQIWWFEVVGELEFC--FPAGTYSLYFRLHLGKASTRFGRR 201
SRF VA L ++ G L PA Y+ Y L G A+ G R
Sbjct: 148 SRFEEVAQLVDCTCLDIYGRLPAAALTPATPYAAY--LVFGTAAAAEGHR 195
>Os12g0131600 Cyclin-like F-box domain containing protein
Length = 185
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 43 EICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSVMGKKEVYA 102
+ CR + ++ F+ AA+++ VWE LP +Y +L D + KE++
Sbjct: 49 DACRCSAVSADFQAAASSNAVWERFLPPDYHSILARADDPVDF--------TTSNKELFL 100
Query: 103 RLAKA-VPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHS 158
LA+ V D K WLE++ G C LSS+SL I DD RYW + +SRF S
Sbjct: 101 SLAQDHVLLDQRSKSFWLERTSGAKCYLLSSRSLEIAWGDDARYWRWIYLPDSRFAS 157
>Os02g0812600 Cyclin-like F-box domain containing protein
Length = 485
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 37 LHLDAP-EICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDGAMXXXXXXXXXSVM 95
L L +P + C A + R FR AA +D VW LP + L DG +
Sbjct: 24 LSLTSPRDACSAAAVCRDFRAAADSDAVWSRFLPRD---LPRLADGELSPPPP------- 73
Query: 96 GKKEVYARLAKA---VPFDGGKKELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTT 152
K ++ RL+ A +P + +WLE+ KGG C LS+++L IT D RYW +P T
Sbjct: 74 STKGLFLRLSAAPLLLPHE--LTSMWLEREKGGKCYMLSARALQITWGDTPRYWRWIPLT 131
Query: 153 ESRFHSVAYLQQIWWFEVVGEL 174
+SR A L + W E+ G++
Sbjct: 132 DSRLEG-AELLSVCWLEIHGKI 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,323,028
Number of extensions: 357683
Number of successful extensions: 609
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 11
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)