BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0675800 Os02g0675800|AK100726
(297 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0675800 Cyclin-like F-box domain containing protein 577 e-165
Os04g0571300 Cyclin-like F-box domain containing protein 447 e-126
Os03g0116700 Cyclin-like F-box domain containing protein 377 e-105
Os09g0525300 Cyclin-like F-box domain containing protein 327 5e-90
Os10g0522400 Cyclin-like F-box domain containing protein 159 2e-39
Os02g0224900 Conserved hypothetical protein 151 5e-37
Os02g0812500 Cyclin-like F-box domain containing protein 86 4e-17
Os02g0813300 Cyclin-like F-box domain containing protein 78 1e-14
Os08g0150700 Cyclin-like F-box domain containing protein 74 9e-14
Os02g0812600 Cyclin-like F-box domain containing protein 68 9e-12
Os12g0131600 Cyclin-like F-box domain containing protein 67 1e-11
>Os02g0675800 Cyclin-like F-box domain containing protein
Length = 297
Score = 577 bits (1487), Expect = e-165, Method: Compositional matrix adjust.
Identities = 279/297 (93%), Positives = 279/297 (93%)
Query: 1 MGSGSSILGADGEWGVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWA 60
MGSGSSILGADGEWGVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWA
Sbjct: 1 MGSGSSILGADGEWGVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWA 60
Query: 61 GKLPVNYRYLLXXXXXXXXXXXXXXXXXXKRSSPSSKKDIFARLCRPTPFDFGNKEFWID 120
GKLPVNYRYLL KRSSPSSKKDIFARLCRPTPFDFGNKEFWID
Sbjct: 61 GKLPVNYRYLLAFAAAADDEGGDGGHGNGKRSSPSSKKDIFARLCRPTPFDFGNKEFWID 120
Query: 121 KNKGGICLSISSKAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFCFPA 180
KNKGGICLSISSKAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFCFPA
Sbjct: 121 KNKGGICLSISSKAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFCFPA 180
Query: 181 GSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLEQEGSW 240
GSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLEQEGSW
Sbjct: 181 GSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLEQEGSW 240
Query: 241 ILYHVGDFVVLNSDELMKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKANIVHM 297
ILYHVGDFVVLNSDELMKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKANIVHM
Sbjct: 241 ILYHVGDFVVLNSDELMKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKANIVHM 297
>Os04g0571300 Cyclin-like F-box domain containing protein
Length = 304
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/302 (71%), Positives = 244/302 (80%), Gaps = 8/302 (2%)
Query: 1 MGSG-SSILGADG---EWGVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASAD 56
MG+G SS++G +G WG TSLGDMPESCVAAVLLYLDPPEIC+VARLNRAFRGAASAD
Sbjct: 1 MGAGASSMMGPEGYGRGWGQTSLGDMPESCVAAVLLYLDPPEICKVARLNRAFRGAASAD 60
Query: 57 CVWAGKLPVNYRYLLXXXXXXXXXXXXXXXXXXKRSSPSS----KKDIFARLCRPTPFDF 112
CVWA KLP NYRYL S SS KK+I+ARLCRPTPFD
Sbjct: 61 CVWAAKLPANYRYLAALAAAADDDSGGDGATEGNGSRCSSAAMIKKEIYARLCRPTPFDG 120
Query: 113 GNKEFWIDKNKGGICLSISSKAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDG 172
G KEFW++KNKGG+C+SISSKAM ITGIDDRRYWS L+TEESRFHH+AYLQQIWWLEV G
Sbjct: 121 GTKEFWMEKNKGGLCISISSKAMAITGIDDRRYWSHLSTEESRFHHVAYLQQIWWLEVAG 180
Query: 173 ELDFCFPAGSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEY 232
E+DFCFPAGSYS+FFRL LGRP++ MGRR+ G E +HGW KPTRFQLSTSD+Q ATS+Y
Sbjct: 181 EIDFCFPAGSYSLFFRLQLGRPHKYMGRRVYGYESIHGWNIKPTRFQLSTSDDQQATSQY 240
Query: 233 YLEQEGSWILYHVGDFVVLNSDELMKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKA 292
YL + G+WILYHVGDFVV +SD+L LKFSM+QIDCTHTKGGLCVDSV IYPKG+RHE
Sbjct: 241 YLNEPGNWILYHVGDFVVSSSDQLTNLKFSMMQIDCTHTKGGLCVDSVFIYPKGHRHEDC 300
Query: 293 NI 294
I
Sbjct: 301 TI 302
>Os03g0116700 Cyclin-like F-box domain containing protein
Length = 297
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/296 (60%), Positives = 221/296 (74%), Gaps = 10/296 (3%)
Query: 1 MGSGSSILGADGEW-----GVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASA 55
MG+G S L A E G LG++PE C A VLL+LD PEIC++ARLNRAFRGAA+A
Sbjct: 1 MGAGVSDLAAGMEAVGKVAGGAGLGELPELCAAEVLLHLDAPEICRLARLNRAFRGAAAA 60
Query: 56 DCVWAGKLPVNYRYLLXXXXXXXXXXXXXXXXXXKRSSPSSKKDIFARLCRPTPFDFGNK 115
D VW KLP NY YLL + S KK+++ARL + PFD G K
Sbjct: 61 DFVWEAKLPENYGYLLDFVDGAMEGGGGG-----RERSVMGKKEVYARLAKAVPFDGGKK 115
Query: 116 EFWIDKNKGGICLSISSKAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELD 175
E W++K+KGG+C+++SSK++VITGIDDRRYWS + T ESRFH +AYLQQIWW EV GEL+
Sbjct: 116 ELWLEKSKGGVCIALSSKSLVITGIDDRRYWSHMPTTESRFHSVAYLQQIWWFEVVGELE 175
Query: 176 FCFPAGSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLE 235
FCFPAG+YS++FRLHLG+ R GRR+C +EQ+HGW+ KP RFQLSTSD QHA S+ YL+
Sbjct: 176 FCFPAGTYSLYFRLHLGKASTRFGRRVCSSEQIHGWDKKPVRFQLSTSDGQHALSQCYLD 235
Query: 236 QEGSWILYHVGDFVVLNSDELMKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEK 291
+ GSWILYHVGDFV +++ +KLKFS+ QIDCTHTKGGLCVDSVLIYPKG++ EK
Sbjct: 236 EPGSWILYHVGDFVASTTEQPIKLKFSLAQIDCTHTKGGLCVDSVLIYPKGFQQEK 291
>Os09g0525300 Cyclin-like F-box domain containing protein
Length = 281
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 156/281 (55%), Positives = 200/281 (71%), Gaps = 16/281 (5%)
Query: 17 TSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXXXX 76
T+LGD+PESCVA VL LDPPEIC++ARL+R F G VW KLP NY LL
Sbjct: 17 TALGDLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYARLLAVAAD 70
Query: 77 XXXXXXXXXXXXXKRSSPSSKKDIFARLCRPTPFDFGNKEFWIDKNKGGICLSISSKAMV 136
KK+++ARLCR D G KEFW+DK GG+C++ISS+A+
Sbjct: 71 GEAAALEAI----------PKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALS 120
Query: 137 ITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFCFPAGSYSIFFRLHLGRPYR 196
ITGIDDRRYW+ + +ESRFH +AYL QIWW EV GE++FCFP G+YS+FFRLHLGRP +
Sbjct: 121 ITGIDDRRYWNFIPNDESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLK 180
Query: 197 RMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLEQEGSWILYHVGDFVVLNSDEL 256
R+GRR+ +E +HGW+ KP RFQLSTSD Q A S+ YL G WI +HVGDFVV +S+EL
Sbjct: 181 RLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNEL 240
Query: 257 MKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKANIVHM 297
+K++F+M+QIDCTHTKGGLCVDSV + P+ +KA+ +++
Sbjct: 241 VKIQFAMVQIDCTHTKGGLCVDSVAVKPQYLAKKKASRIYV 281
>Os10g0522400 Cyclin-like F-box domain containing protein
Length = 165
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 106/166 (63%), Gaps = 12/166 (7%)
Query: 1 MGSG-SSILGADGEWGVTSLG----------DMPESCVAAVLLYLDPPEICQVARLNRAF 49
MG+G S + G G+ G TS D+PE C A VLL LD PEIC++ARLN AF
Sbjct: 1 MGAGVSGLFGLGGDEGETSAAVGGAAAAGLGDLPELCAAEVLLRLDAPEICRLARLNHAF 60
Query: 50 RGAASADCVWAGKLPVNYRYLLXXXXXXXXXXXXXXXXXXKRSSPSSKKDIFARLCRPTP 109
RGAA AD VW KLP NYRYL+ + P+ KK+I+ARL RP P
Sbjct: 61 RGAAGADFVWEAKLPENYRYLMSFVEGGGGGDDGRQLRRRR-WRPAGKKEIYARLARPVP 119
Query: 110 FDFGNKEFWIDKNKGGICLSISSKAMVITGIDDRRYWSQLATEESR 155
FD G+KEFW++K+KG +C+++SSK++VITGIDDRRYW + T ESR
Sbjct: 120 FDGGSKEFWLEKSKGRVCMALSSKSLVITGIDDRRYWQHIPTAESR 165
>Os02g0224900 Conserved hypothetical protein
Length = 237
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 83/109 (76%)
Query: 155 RFHHIAYLQQIWWLEVDGELDFCFPAGSYSIFFRLHLGRPYRRMGRRICGTEQVHGWEAK 214
RFH +AYLQQIW EV GE+DF F +YS++FR+HLGR Y+R GRR C TE VHGW+ K
Sbjct: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
Query: 215 PTRFQLSTSDEQHATSEYYLEQEGSWILYHVGDFVVLNSDELMKLKFSM 263
P RFQLSTSD QH+ S+ L + GSW+LYH G+FVV D+ +KLKFSM
Sbjct: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVVSKPDQTIKLKFSM 236
>Os02g0812500 Cyclin-like F-box domain containing protein
Length = 332
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 22 MPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXXXXXXXXX 81
+PE CVA + P + C + ++ AFR AA +D VW LP ++ +L
Sbjct: 14 LPEECVAYAISMTTPGDACHSSAVSPAFRAAADSDAVWDSFLPPDHAAILARADDGIAAA 73
Query: 82 XXXXXXXXKRSSPSSKKDIFARLC-RPTPFDFGNKEFWIDKNKGGICLSISSKAMVITGI 140
+SKKD+FARLC RP D F +D+ G C+ +S++A+ I
Sbjct: 74 GEC----------ASKKDLFARLCGRPVLLDDATMSFGLDRRSGAKCVMLSARALSIAWG 123
Query: 141 DDRRYWS-QLATEESRFHHIAYLQQIWWLEVDGELDFCF--PAGSYSIFF 187
DD W SRF +A L + WLE+ G+L PA +Y+ +
Sbjct: 124 DDPSRWRWTPGLPGSRFPEVAELLDVCWLEITGKLQLSLLSPATTYAAYL 173
>Os02g0813300 Cyclin-like F-box domain containing protein
Length = 297
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 15 GVTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXX 74
G+ + +PE ++A + P + C A ++ AFR AA +D VWA LP N L
Sbjct: 7 GLCEIARLPEELLSAAISRASPRDACHAAAVSPAFRAAADSDAVWASFLPRNLPDLADGE 66
Query: 75 XXXXXXXXXXXXXXXKRSSPSSKKDIFARLCRPTPFDFGNK--EFWIDKNKGGICLSISS 132
+P+SKK++F RL P+ ++ W+D+ G C +S+
Sbjct: 67 LS---------------PAPASKKELFLRLSD-GPYLLSDRLMSMWLDRETGAKCYMLSA 110
Query: 133 KAMVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGEL--DFCFPAGSYSIFFRLH 190
+++VI D YW + +SRF A L + WLE+ G + P +Y+ +
Sbjct: 111 RSLVIIWGDTPHYWRWIPLTDSRFAEGAELIDVCWLEIRGRIHSKMLSPNSTYAAYMVFK 170
Query: 191 LGRPY 195
+ +
Sbjct: 171 IADEF 175
>Os08g0150700 Cyclin-like F-box domain containing protein
Length = 299
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 16 VTSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXXX 75
T +GD+PE+C+A V+ P + C++A ++ +FR AA +D VW LP +YR +
Sbjct: 17 TTRVGDLPEACLADVIALTSPRDACRLAAVSPSFRAAAESDAVWDRFLPPDYRAIA---- 72
Query: 76 XXXXXXXXXXXXXXKRSSPSSKKDIFARLC-RPTPFDFGNKEFWIDKNKGGICLSISSKA 134
KR KK ++ LC +P P D G+ W++K G C ++ ++
Sbjct: 73 PLPPPPATAAASGGKR----MKKGVYLGLCDKPVPVDDGSMMVWLEKESGAKCFALPARK 128
Query: 135 MVITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFC--FPAGSYSIFF 187
+ + D W SRF +A L L++ G L PA Y+ +
Sbjct: 129 LSLPWEDGEFSWRWTPHPLSRFEEVAQLVDCTCLDIYGRLPAAALTPATPYAAYL 183
>Os02g0812600 Cyclin-like F-box domain containing protein
Length = 485
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 22 MPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXXXXXXXXX 81
+PE + A L P + C A + R FR AA +D VW+ LP + L
Sbjct: 15 LPEELLVAALSLTSPRDACSAAAVCRDFRAAADSDAVWSRFLPRDLPRLADGELS----- 69
Query: 82 XXXXXXXXKRSSPSSKKDIFARL-CRPTPFDFGNKEFWIDKNKGGICLSISSKAMVITGI 140
P S K +F RL P W+++ KGG C +S++A+ IT
Sbjct: 70 ----------PPPPSTKGLFLRLSAAPLLLPHELTSMWLEREKGGKCYMLSARALQITWG 119
Query: 141 DDRRYWSQLATEESRFHHIAYLQQIWWLEVDGEL 174
D RYW + +SR A L + WLE+ G++
Sbjct: 120 DTPRYWRWIPLTDSRLEG-AELLSVCWLEIHGKI 152
>Os12g0131600 Cyclin-like F-box domain containing protein
Length = 185
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 17 TSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLXXXXX 76
+S+ +PE+C+A + + P + C+ + ++ F+ AAS++ VW LP +Y +L
Sbjct: 28 SSISRLPEACLAHAISFTTPTDACRCSAVSADFQAAASSNAVWERFLPPDYHSILARADD 87
Query: 77 XXXXXXXXXXXXXKRSSPSSKKDIFARLCRP-TPFDFGNKEFWIDKNKGGICLSISSKAM 135
+S K++F L + D +K FW+++ G C +SS+++
Sbjct: 88 PVDFT-------------TSNKELFLSLAQDHVLLDQRSKSFWLERTSGAKCYLLSSRSL 134
Query: 136 VITGIDDRRYWSQLATEESRF 156
I DD RYW + +SRF
Sbjct: 135 EIAWGDDARYWRWIYLPDSRF 155
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,707,497
Number of extensions: 429434
Number of successful extensions: 741
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 11
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)