BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0868000 Os01g0868000|Os01g0868000
(351 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0868000 Pathogenesis-related transcriptional factor an... 361 e-100
Os05g0437133 Pathogenesis-related transcriptional factor an... 94 2e-19
AK106361 89 6e-18
Os12g0168100 Similar to AP2 domain containing protein RAP2.... 80 2e-15
Os02g0546800 Pathogenesis-related transcriptional factor an... 77 2e-14
Os11g0168500 Similar to AP2 domain containing protein RAP2.... 77 3e-14
Os02g0546600 Similar to AP2 domain containing protein RAP2.... 75 6e-14
Os04g0398000 Pathogenesis-related transcriptional factor an... 75 9e-14
Os04g0429050 75 1e-13
Os08g0537900 Similar to Ethylene-responsive transcription f... 72 6e-13
Os09g0457900 Similar to AP2 domain containing protein RAP2.... 69 6e-12
Os03g0183000 Similar to AP2 domain containing protein RAP2.... 69 7e-12
Os02g0782700 Similar to Transcription factor EREBP1 67 2e-11
AK100167 67 2e-11
Os06g0194000 Similar to Ethylene-responsive transcription f... 67 2e-11
Os08g0474000 Similar to AP2 domain containing protein RAP2.... 65 5e-11
Os07g0617000 Similar to Ethylene response factor 2 65 6e-11
>Os01g0868000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 351
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/351 (57%), Positives = 201/351 (57%)
Query: 1 MTVAGASELMSGYYQAQEMSTMVSALARVVAXXXXXXXXXXXXQXXXXXXXXXXXXXXXX 60
MTVAGASELMSGYYQAQEMSTMVSALARVVA Q
Sbjct: 1 MTVAGASELMSGYYQAQEMSTMVSALARVVAGGGGGGGDGDGDQWAWSSPSPSSSAAAAA 60
Query: 61 XRGVQERRREEQAMHELAGYACGGAPSPEFAGXXXXXXXXXXXXXXMDEHHSPVGGGGNA 120
RGVQERRREEQAMHELAGYACGGAPSPEFAG MDEHHSPVGGGGNA
Sbjct: 61 ARGVQERRREEQAMHELAGYACGGAPSPEFAGSEQSSDTQSASAATMDEHHSPVGGGGNA 120
Query: 121 EGPDTPXXXXXXXXXXPWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSR 180
EGPDTP PWGKWAAEIRDPHKAARVWLGTF LRFRGSR
Sbjct: 121 EGPDTPRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSR 180
Query: 181 AKLNFPEDARLYXXXXXXXXXXXXXXXXXXXXXXXXIYPGASQSAEYLRYQMLLQGRLTT 240
AKLNFPEDARLY IYPGASQSAEYLRYQMLLQGRLTT
Sbjct: 181 AKLNFPEDARLYPTAATTTTAAPPPAPVAAASPSAAIYPGASQSAEYLRYQMLLQGRLTT 240
Query: 241 ATPNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYYSFXXXXXXXXXXXXXXXXX 300
ATPNQ SYYSF
Sbjct: 241 ATPNQGTLLPFYGGGGGGGSMTNPYGGGGGGAMSGFLGSYYSFPTPSVSVATVPSSTSSA 300
Query: 301 XGNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSESSYXXXXXXXXTQ 351
GNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSESSY TQ
Sbjct: 301 PGNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSESSYHHHPPPPHTQ 351
>Os05g0437133 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 228
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPEDARLYXXXX 196
PWGKWAAEIRDPHKAARVWLGTF LRFRGSRAKLNFPEDARL
Sbjct: 35 PWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGSRAKLNFPEDARL----S 90
Query: 197 XXXXXXXXXXXXXXXXXXXXIYPGASQSAEYLRYQMLLQ 235
YP AS ++YL+YQMLL
Sbjct: 91 SPPAGAGAGGATAAAQTVPVAYP-ASAVSDYLQYQMLLH 128
>AK106361
Length = 93
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 47/73 (64%)
Query: 279 SYYSFXXXXXXXXXXXXXXXXXXGNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSE 338
SYYSF GNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSE
Sbjct: 21 SYYSFPTPSVSVATVPSSTSSAPGNYYSSHGGSHQSMSAAEEWNWENALVYPATAASWSE 80
Query: 339 SSYXXXXXXXXTQ 351
SSY TQ
Sbjct: 81 SSYHHHPPPPHTQ 93
>Os12g0168100 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 341
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 37/51 (72%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPE 187
PWGKWAAEIRDPHKAARVWLGTF LRFRGSRAKLNFPE
Sbjct: 163 PWGKWAAEIRDPHKAARVWLGTFDTAEDAARAYDGAALRFRGSRAKLNFPE 213
>Os02g0546800 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 216
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 37/53 (69%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPEDA 189
PWGKWAAEIRDP KAARVWLGTF LRFRG RAKLNFPE+A
Sbjct: 100 PWGKWAAEIRDPRKAARVWLGTFRTTEDAARAYDAAVLRFRGRRAKLNFPEEA 152
>Os11g0168500 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 318
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 36/52 (69%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPED 188
PWGKWAAEIRDP KAARVWLGTF LRFRG RAKLNFPED
Sbjct: 138 PWGKWAAEIRDPVKAARVWLGTFDTAEAAARAYDDAALRFRGCRAKLNFPED 189
>Os02g0546600 Similar to AP2 domain containing protein RAP2.2 (Fragment)
Length = 247
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 36/53 (67%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPEDA 189
PWGKWAAEIRDP KAARVWLGTF LRFRG RAKLNFPE+
Sbjct: 133 PWGKWAAEIRDPRKAARVWLGTFRTAEDAARAYDAAALRFRGRRAKLNFPEEV 185
>Os04g0398000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 268
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 36/51 (70%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPE 187
PWGKWAAEIRDP KAARVWLGTF LRF+G++AKLNFPE
Sbjct: 74 PWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFPE 124
>Os04g0429050
Length = 260
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 35/50 (70%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFP 186
PWGKWAAEIRDPH+AARVWLGTF LRFRG RA+LNFP
Sbjct: 86 PWGKWAAEIRDPHRAARVWLGTFATAEDAARAYDAAALRFRGGRARLNFP 135
>Os08g0537900 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3) (EREBP-3)
(AtERF3)
Length = 541
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 113 PVGGGGNAEGPDT--PXXXXXXXXXXPWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXX 170
P G A P+ P PWGKWAAEIRDP KAARVWLGTF
Sbjct: 344 PSSSGSAATAPEQQQPRRRYRGVRQRPWGKWAAEIRDPVKAARVWLGTFDTAEDAARAYD 403
Query: 171 XXXLRFRGSRAKLNFPEDA 189
+RF+GS+AK+NFP++
Sbjct: 404 AAAVRFKGSKAKVNFPDEV 422
>Os09g0457900 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 274
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFP 186
PWGKWAAEIRDP +A R WLGTF L FRG+RAKLNFP
Sbjct: 137 PWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAALEFRGARAKLNFP 186
>Os03g0183000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 334
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 32/50 (64%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFP 186
PWGKWAAEIRDPHK RVWLGTF R RGS+AK+NFP
Sbjct: 118 PWGKWAAEIRDPHKGTRVWLGTFNTPEEAARAYDVEARRLRGSKAKVNFP 167
>Os02g0782700 Similar to Transcription factor EREBP1
Length = 365
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 31/51 (60%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPE 187
PWGKWAAEIRDP K RVWLGTF R RG +AK+NFPE
Sbjct: 127 PWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPE 177
>AK100167
Length = 571
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 32/53 (60%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPEDA 189
PWGKWAAEIRDP K RVWLGTF R RG +AK+NFP+ A
Sbjct: 122 PWGKWAAEIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGA 174
>Os06g0194000 Similar to Ethylene-responsive transcription factor 3
(Ethylene-responsive element binding factor 3 homolog)
(EREBP-5) (NtERF5)
Length = 362
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 32/53 (60%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPEDA 189
PWGKWAAEIRDP K RVWLGTF R RG +AK+NFP+ A
Sbjct: 122 PWGKWAAEIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGA 174
>Os08g0474000 Similar to AP2 domain containing protein RAP2.6 (Fragment)
Length = 219
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 31/50 (62%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFP 186
PWGKWAAEIRDP +A R WLGTF + FRG RAKLNFP
Sbjct: 83 PWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGPRAKLNFP 132
>Os07g0617000 Similar to Ethylene response factor 2
Length = 342
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 31/51 (60%)
Query: 137 PWGKWAAEIRDPHKAARVWLGTFXXXXXXXXXXXXXXLRFRGSRAKLNFPE 187
PWGKWAAEIRDP K RVWLGTF R RG +AK+NFP+
Sbjct: 119 PWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVNFPD 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,236,463
Number of extensions: 200636
Number of successful extensions: 420
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 19
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)