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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0868000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.26 (0.0434) R2 : 0.344
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.907 (0.105) R2dC : 0.106 R2C : 0.0733
β3 : 2.54 (0.21) R2dE : 0.227 R2E : 0.224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.261 (0.0947) R2dN8 : 0.0127 R2N8 : 0.0414
σ : 0.807
deviance : 300.3
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_____
C
peak time of C : 13.8
E
wheather : radiation
threshold : 4.29
memory length : 1244
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.87
open length of G : 10.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.2 0.798 9.27 -0.588 0.879 2.25 -0.595 -0.759 -0.311 13.5 5.464 1257 7.93 10.6
288.96 0.792 9.28 -0.593 0.886 2.31 -0.604 -- -0.326 13.4 5.137 1252 7.93 10.6
289.29 0.792 9.27 -0.62 0.907 2.28 -- -0.506 -0.328 13.7 5.278 1246 7.93 10.7
289.65 0.793 9.28 -0.658 0.876 2.35 -- -- -0.338 13.8 4.937 1249 7.9 10.7
332.95 0.85 9.3 -0.634 -- 2.29 -- -0.302 -0.335 -- 5.373 1332 7.97 10.6
372.19 0.904 9.35 -0.929 0.74 -- -0.208 -- -0.672 13.3 -- -- -- --
372.35 0.904 9.36 -0.935 0.742 -- -- -- -0.673 13.4 -- -- -- --
330.97 0.847 9.29 -0.656 -- 2.18 -- -- -0.326 -- 4.62 1340 7.87 10.4
300.3 0.807 9.26 -- 0.907 2.54 -- -- -0.261 13.8 4.29 1244 7.87 10.6
406.2 0.942 9.37 -0.965 -- -- -- -- -0.689 -- -- -- -- --
395.41 0.93 9.33 -- 0.758 -- -- -- -0.569 13.4 -- -- -- --
341.64 0.861 9.28 -- -- 2.27 -- -- -0.287 -- 4.14 1340 7.78 10.4
430.74 0.969 9.34 -- -- -- -- -- -0.582 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.66 radiation 1 720 > th dose independent rect. 9 21
3 307.69 radiation 10 1440 > th dose independent rect. 16 22
5 308.06 radiation 10 1440 < th dose dependent rect. 8 10
7 308.59 radiation 10 1440 < th dose dependent rect. 8 19
8 308.61 radiation 10 1440 < th dose dependent rect. 8 16
15 308.68 radiation 10 1440 < th dose dependent rect. 8 13
18 308.77 humidity 80 1440 < th dose independent rect. 7 6
20 309.05 radiation 1 720 > th dose independent sin 20 NA
25 309.16 humidity 50 720 > th dose dependent rect. 16 7
36 309.47 radiation 1 1440 < th dose independent rect. 9 21
40 309.67 humidity 90 720 < th dose dependent rect. 16 7
45 309.92 radiation 10 1440 > th dose independent rect. 6 8
59 310.06 humidity 70 720 > th dose independent sin 12 NA
61 310.07 radiation 1 720 > th dose independent rect. 9 10
71 310.11 radiation 10 1440 > th dose independent rect. 6 11
89 310.23 radiation 10 1440 > th dose independent sin 2 NA
97 310.38 humidity 70 720 > th dose independent rect. 16 15
98 310.42 humidity 70 720 > th dose independent rect. 19 1
113 310.53 radiation 10 1440 > th dose independent no NA NA
196 310.85 radiation 1 720 > th dose independent rect. 13 17
197 310.85 radiation 10 1440 > th dose independent rect. 11 23
215 311.15 radiation 10 1440 < th dose dependent sin 20 NA
216 311.17 temperature 25 720 > th dose dependent rect. 17 15
225 311.38 radiation 10 1440 > th dose independent rect. 13 23
261 312.13 humidity 70 720 < th dose independent sin 13 NA
304 312.56 temperature 25 720 > th dose dependent rect. 17 7
318 312.84 humidity 80 1440 > th dose independent rect. 7 7
319 312.87 radiation 1 720 < th dose independent rect. 5 23
331 312.88 radiation 1 720 < th dose dependent rect. 5 13
364 313.16 humidity 70 720 < th dose independent rect. 18 14
371 313.28 radiation 10 1440 < th dose dependent rect. 16 2
396 313.52 radiation 10 1440 > th dose independent rect. 8 6
399 313.57 humidity 80 720 < th dose dependent sin 13 NA
408 313.73 humidity 70 720 < th dose independent rect. 18 2
426 313.92 radiation 1 1440 < th dose independent rect. 9 18
427 313.93 humidity 60 720 > th dose dependent rect. 17 4
429 313.94 radiation 1 1440 < th dose independent rect. 9 16
430 313.96 radiation 10 1440 < th dose dependent rect. 16 8
433 313.98 radiation 10 1440 < th dose dependent rect. 16 11
438 314.02 humidity 80 720 < th dose dependent rect. 16 15
446 314.08 radiation 1 1440 < th dose independent rect. 9 12
453 314.10 radiation 10 1440 < th dose dependent rect. 16 5
458 314.13 radiation 1 1440 < th dose independent rect. 9 10
466 314.19 humidity 70 720 > th dose independent rect. 16 7
488 314.29 humidity 70 720 > th dose independent rect. 17 3
503 314.44 humidity 90 720 < th dose dependent sin 15 NA
518 314.51 radiation 1 720 < th dose dependent rect. 21 21
596 315.02 radiation 10 1440 < th dose dependent rect. 13 14
597 315.03 temperature 25 720 > th dose dependent sin 11 NA
601 315.04 radiation 10 1440 < th dose dependent rect. 13 12
636 315.14 radiation 10 1440 < th dose dependent rect. 13 8
643 315.21 radiation 1 720 > th dose independent rect. 17 13
676 315.31 humidity 70 720 > th dose independent rect. 18 10
682 315.36 radiation 10 1440 < th dose dependent rect. 13 17
791 315.77 radiation 1 720 < th dose independent rect. 20 23
870 316.01 temperature 25 720 > th dose dependent rect. 20 3
878 316.05 radiation 1 1440 < th dose independent sin 17 NA
889 316.08 radiation 1 720 > th dose independent rect. 13 6
935 316.30 radiation 1 720 < th dose dependent rect. 5 22
979 316.53 humidity 80 1440 < th dose independent sin 4 NA