Os02g0546800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os02g0546800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.83 | 0.223 | 962 | -5860 | 0.0394 | 280000 | -0.21 | -1710000 | -0.00277 | 4.09 | 995 | 10 | -- | -- |
| 19.34 | 0.206 | 2.9 | 0.0693 | 0.00563 | 3.89 | 0.257 | -- | 5.98e-05 | 13.8 | 994.8 | 14 | -- | -- |
| 22.84 | 0.223 | 962 | -5860 | 0.0608 | 280000 | -- | -1710000 | 0.00251 | 7.85 | 995 | 10 | -- | -- |
| 19.44 | 0.205 | 2.9 | 0.0794 | 0.0506 | 3.93 | -- | -- | 0.00288 | 7.95 | 994.8 | 14 | -- | -- |
| 22.96 | 0.223 | 956 | -5830 | -- | 280000 | -- | -1710000 | 0.00184 | -- | 995 | 10 | -- | -- |
| 34.37 | 0.275 | 2.9 | 0.0896 | 0.0273 | -- | 0.347 | -- | -0.00858 | 14.5 | -- | -- | -- | -- |
| 34.75 | 0.276 | 2.9 | 0.0985 | 0.0403 | -- | -- | -- | -0.00691 | 11.1 | -- | -- | -- | -- |
| 19.59 | 0.206 | 2.9 | 0.0763 | -- | 3.91 | -- | -- | 0.00164 | -- | 994.8 | 14 | -- | -- |
| 19.59 | 0.206 | 2.9 | -- | 0.0526 | 3.94 | -- | -- | -0.00729 | 7.78 | 994.8 | 14 | -- | -- |
| 34.85 | 0.276 | 2.9 | 0.0976 | -- | -- | -- | -- | -0.00723 | -- | -- | -- | -- | -- |
| 35 | 0.277 | 2.9 | -- | 0.0394 | -- | -- | -- | -0.0179 | 10.9 | -- | -- | -- | -- |
| 19.74 | 0.207 | 2.9 | -- | -- | 3.92 | -- | -- | -0.00672 | -- | 994.8 | 14 | -- | -- |
| 35.1 | 0.277 | 2.9 | -- | -- | -- | -- | -- | -0.0181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.18 | atmosphere | 995 | 30 | > th | dose independent | sin | 6 | NA |
| 7 | 19.40 | atmosphere | 995 | 30 | < th | dose independent | rect. | 18 | 22 |
| 8 | 19.40 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 11 | 19.41 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 12 | 19.41 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 13 | 19.41 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 139 | 19.41 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 141 | 19.41 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 142 | 19.41 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 309 | 20.63 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 486 | 22.85 | atmosphere | 995 | 10 | < th | dose dependent | no | NA | NA |
| 698 | 22.98 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 795 | 25.70 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 1 |