BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0708500 Os01g0708500|AK061091
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0708500 Conserved hypothetical protein 730 family protein 437 e-123
Os05g0541200 Conserved hypothetical protein 730 family protein 351 2e-97
Os02g0628000 294 3e-80
Os04g0518800 Similar to Lysine decarboxylase-like protein 287 5e-78
Os10g0479500 Similar to Lysine decarboxylase-like protein 285 2e-77
Os03g0109300 Similar to Lysine decarboxylase-like protein 277 4e-75
Os01g0588900 Conserved hypothetical protein 730 family protein 264 3e-71
Os05g0591600 Similar to Lysine decarboxylase-like protein 243 7e-65
Os03g0857900 Similar to Lysine decarboxylase-like protein 242 1e-64
Os09g0547500 Similar to Lysine decarboxylase-like protein 241 4e-64
Os03g0697200 Similar to Lysine decarboxylase-like protein 226 1e-59
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/223 (96%), Positives = 215/223 (96%)
Query: 1 MGDNSXXXXXXXXPRGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSV 60
MGDNS PRGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSV
Sbjct: 1 MGDNSAAAAAVAAPRGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSV 60
Query: 61 GLMGLIAQTVLDGGCGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIA 120
GLMGLIAQTVLDGGCGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIA
Sbjct: 61 GLMGLIAQTVLDGGCGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIA 120
Query: 121 LPGGYGTMEELLEMITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQII 180
LPGGYGTMEELLEMITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQII
Sbjct: 121 LPGGYGTMEELLEMITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQII 180
Query: 181 VSAPTAHELLRKMEQYTRSHQEVAPRTSWEMSELGYGKTPEES 223
VSAPTAHELLRKMEQYTRSHQEVAPRTSWEMSELGYGKTPEES
Sbjct: 181 VSAPTAHELLRKMEQYTRSHQEVAPRTSWEMSELGYGKTPEES 223
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 351 bits (901), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/204 (83%), Positives = 182/204 (89%)
Query: 17 RFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCG 76
RFG ICVFCGSNAG R VFGDAAL LG ELV RG++LVYGGGS+GLMGLIA+TVLDGG
Sbjct: 15 RFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGRR 74
Query: 77 VLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMIT 136
V+GVIP+ALM EISG SVGEV +V DMHERKAEMAR+S AFIALPGGYGTMEELLEMIT
Sbjct: 75 VVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMIT 134
Query: 137 WSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQY 196
W QLGIHDKPVGLLNVDGYYDPLLALFDKG AEGFI +DCRQI VSAPTA ELL KMEQY
Sbjct: 135 WCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQY 194
Query: 197 TRSHQEVAPRTSWEMSELGYGKTP 220
TR HQEVAP TSWE+SELGYG+TP
Sbjct: 195 TRLHQEVAPATSWEISELGYGRTP 218
>Os02g0628000
Length = 289
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 133/205 (64%), Positives = 166/205 (80%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
+ RF R+CVFCGS+ G + ++ DAA++LG+ELV+R I+LVYGGGSVGLMGL++Q V +GG
Sbjct: 17 QSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGG 76
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
V+GVIPK LMP EISG +VGEVK VSDMH+RKAEMARQSDAFIALPGGYGT+EELLE+
Sbjct: 77 RHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 136
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
I W+QLGIHDKPVGLLNVDGYY+PLL+ DK EGFI+ R IIV APT EL+ K+E
Sbjct: 137 IAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIEKLE 196
Query: 195 QYTRSHQEVAPRTSWEMSELGYGKT 219
+Y+ H++V + WEM ++ Y +
Sbjct: 197 EYSPQHEKVVSKMKWEMEQMSYPQN 221
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 287 bits (734), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 134/207 (64%), Positives = 163/207 (78%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
+ RF RICVFCGS+ G + + DAA++LG+ELV+R I+LVYGGGSVGLMGL++Q V +GG
Sbjct: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGG 83
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
V+GVIPK LMP EI+G +VGEVK V+DMH+RKAEMARQSDAFIALPGGYGT+EELLE+
Sbjct: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
I W+QLGIHDKPVGLLNVDGYY+ LL+ DK E FI R IIV APT ELL K+E
Sbjct: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
Query: 195 QYTRSHQEVAPRTSWEMSELGYGKTPE 221
Y+ H +V P+ WEM ++ Y K+ E
Sbjct: 204 AYSPRHDKVVPKMQWEMEKMSYCKSCE 230
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/202 (66%), Positives = 160/202 (79%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
+ RF RICVFCGS+ G + + DAA++LG ELV+R I+LVYGGGS+GLMGL++Q V DGG
Sbjct: 14 QSRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGG 73
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
V+GVIPK LM EISG +VGEV+ V+DMH+RKAEMARQSDAFIALPGGYGT+EELLE+
Sbjct: 74 RHVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 133
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
ITW+QLGIH KPVGLLNVDGYY+ LL DK EGFI R+IIV APTA EL+ K+E
Sbjct: 134 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDKLE 193
Query: 195 QYTRSHQEVAPRTSWEMSELGY 216
+Y H VA + +WEM LGY
Sbjct: 194 EYVPYHDRVASKLNWEMGHLGY 215
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 17 RFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCG 76
RF R CVFCGS+ GN+ + DAA+ L +ELV+RGI+LVYGGGS+GLMGL++Q V DGG
Sbjct: 12 RFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRH 71
Query: 77 VLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMIT 136
V+GVIPK LM EI G +VGEV+ VSDMH+RKAEMARQSDAFIALPGGYGT+EELLE+IT
Sbjct: 72 VIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVIT 131
Query: 137 WSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQY 196
W+QLGIH KPVGLLNVDGYY+ LL D+ EGFI R+IIVSAPTA EL+ K+E+Y
Sbjct: 132 WAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEEY 191
Query: 197 TRSHQEVAPRTSWEMSELGY 216
H VA +WE LG+
Sbjct: 192 VPYHDRVASGLNWETGHLGF 211
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 124/187 (66%), Positives = 153/187 (81%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
R RF RICV+CGS G +A + DAA++LG+ELV RGI+LVYGGGS+GLMGL++ V DGG
Sbjct: 32 RSRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGG 91
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
V+GVIPK+LMP E++G VGEV+ VS MHERKAEMAR +DAFIALPGGYGT+EELLE+
Sbjct: 92 RHVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEV 151
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
ITW+QLGIH KPVGLLNVDG+YDP L+ D +EGFI D R+II+SAPTA EL+ K+E
Sbjct: 152 ITWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLE 211
Query: 195 QYTRSHQ 201
+Y ++
Sbjct: 212 EYVPEYE 218
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 243 bits (621), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 118/192 (61%), Positives = 146/192 (76%), Gaps = 9/192 (4%)
Query: 18 FGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCGV 77
F RICV+CGS G + + DAA+ LG+ELV RGI+LVYGGGS+GLMGL++ V GG V
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 78 LGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALP---------GGYGTM 128
+G+IPK+LMP E++G VGEV+ VS MHERKAEMAR +DAFIALP GGYGT+
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 129 EELLEMITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHE 188
EELLE+ITW+QLGIH KPVGLLNVDG+Y+PLL+ D EGFI + R+II+SAPTA E
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 189 LLRKMEQYTRSH 200
L+ K+E Y +
Sbjct: 237 LVMKLEDYVPEY 248
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/199 (61%), Positives = 155/199 (77%), Gaps = 1/199 (0%)
Query: 17 RFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCG 76
RF R+CVFCGS+ G +A + AA+QLGQ+LV RGI+LVYGGGSVGLMGL+++ V GG
Sbjct: 31 RFRRVCVFCGSSPGKKASYQVAAVQLGQQLVERGIDLVYGGGSVGLMGLVSRAVHGGGGH 90
Query: 77 VLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMIT 136
V+GV+P ++P E+ G ++GEV+ V MH+RKAEMAR+SDAFIALPGGYGT+EELLE+IT
Sbjct: 91 VVGVVPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVIT 150
Query: 137 WSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQY 196
W+QL IH KPVGLLNVDGYYD LLA DK EGF+ R+IIV+APTA +LL K+E+Y
Sbjct: 151 WAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEEY 210
Query: 197 T-RSHQEVAPRTSWEMSEL 214
H A + +WEMS +
Sbjct: 211 VPPPHDATALKLTWEMSTV 229
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/183 (61%), Positives = 145/183 (79%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
+ RF R+CVFCGS++G R + DAA++LG+ELV+R ++LVYGGGS+GLMG +A+ V +GG
Sbjct: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
V+GVIP LM E++G +VGEV+ V MHERKAEMAR+SDAF+ALPGGYGT+EE++E+
Sbjct: 103 GHVIGVIPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
I W+QLGIH KPVGLLNVDGYYD LLA DK A+GFI R + VSAP A L+ K+E
Sbjct: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
Query: 195 QYT 197
+Y
Sbjct: 223 EYV 225
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/181 (66%), Positives = 143/181 (79%)
Query: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
RG ICVFCGS GNR F AAL LG++LV R ++LVYGGGS GLMGL+++TV DGG
Sbjct: 17 RGPVRTICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGG 76
Query: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
VLGVIP AL+P E+SG ++GE K+V DMHERK+EMA+ +DAFIALPGGYGT+EELLE+
Sbjct: 77 RHVLGVIPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALPGGYGTIEELLEI 136
Query: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
I W+QLGIH+KPVGLLNVDGYY+ LL+LFDKG EGFI A R I V A A ELL K+
Sbjct: 137 IAWAQLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLTKLT 196
Query: 195 Q 195
+
Sbjct: 197 E 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,121,599
Number of extensions: 349735
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 11
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)