BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0595400 Os01g0595400|AK068184
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0595400 Protein of unknown function DUF538 family protein 269 6e-73
Os05g0421100 Protein of unknown function DUF538 family protein 86 1e-17
Os11g0241700 Protein of unknown function DUF538 family protein 82 2e-16
Os03g0692700 Similar to Pherophorin-S precursor 82 2e-16
Os05g0362300 Protein of unknown function DUF538 family protein 81 4e-16
Os11g0241832 77 6e-15
Os05g0362500 Virulence factor, pectin lyase fold family pro... 73 7e-14
Os12g0198000 Protein of unknown function DUF538 family protein 70 6e-13
Os04g0443200 Protein of unknown function DUF538 family protein 69 2e-12
Os03g0693400 Protein of unknown function DUF538 family protein 66 1e-11
Os01g0913100 Protein of unknown function DUF538 family protein 63 1e-10
>Os01g0595400 Protein of unknown function DUF538 family protein
Length = 160
Score = 269 bits (688), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 27 PVVRSDAGGDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAG 86
PVVRSDAGGDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAG
Sbjct: 27 PVVRSDAGGDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAG 86
Query: 87 SYLASFSDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPAR 146
SYLASFSDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPAR
Sbjct: 87 SYLASFSDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPAR 146
Query: 147 HFNASLECPAKADS 160
HFNASLECPAKADS
Sbjct: 147 HFNASLECPAKADS 160
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 35 GDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLAS-SCRIVLPAGSYLASFS 93
GD + +AY+ L GFP G+LP V GYTL G+FAV L + C + G Y ++
Sbjct: 54 GDEEPSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGECEFEVDGG-YRLTYQ 112
Query: 94 DRLTGRLDDRRISGLSGIRVRAFFRWWSITG-IRADGDELVFEVGSVSAKFPARHFNASL 152
R+TGR+ I+GL G+ VR F W I + AD D LVF VG +S FP F S
Sbjct: 113 GRITGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESP 172
Query: 153 EC 154
+C
Sbjct: 173 QC 174
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 37 GDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRL 96
D TAYD L+ GFP+G+LP V+GY L F V LA C A Y+ +S R+
Sbjct: 36 ADPTAYDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEF-RAAKKYVLHYSSRV 94
Query: 97 TGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
G++ I+ L G++V+ F W+ I+ + DGD++ VG +A A S +C
Sbjct: 95 AGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
>Os03g0692700 Similar to Pherophorin-S precursor
Length = 174
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 41 AYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRL 100
A D L G P GL+P + YT D+ +GDF + L S+C I GS+LA F D + GR+
Sbjct: 35 ANDLLPEYGLPRGLIPETIASYTFDNDTGDFEIRLTSTCYIWF--GSHLAYFEDAIRGRI 92
Query: 101 DDRRISGLSGIRVRAFFRWWSITGIRADGDE--LVFEVGSVSAKFPARHFNASLECPAKA 158
I+GLSGI+ + FF W SIT I A D+ + F G +S P F C A A
Sbjct: 93 AYGTITGLSGIQAQKFFVWVSITTIVAHPDQGTVEFRAGFISEALPESDFAEVPVCGAGA 152
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDL--ASSCRIVLPAGSYLASFSDRLT 97
TAY+ L FP G+LP V YTLD +GDF L S+C + GSY + RL+
Sbjct: 29 TAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSI-QGSYSLRYQRRLS 87
Query: 98 GRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
GR+ R++ L G+ V+ F W +I + GDEL F VG SA F +F S +C
Sbjct: 88 GRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
>Os11g0241832
Length = 184
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGR 99
T Y+ L GFP G+LPA +GYTLD+G G F V L C V+ Y + + G
Sbjct: 71 TVYEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTLPGDC--VVDVQGYKLRYRSNIYGN 128
Query: 100 LDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
+ I GL G+ V+ W I + ADG ++ F ++S PA F S C
Sbjct: 129 VRAGSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTSPSC 183
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLAS---------SCRIVLPAGSYLA 90
TAY+ L FP+G+LP V YTL++ +GDF L + +C + GSY
Sbjct: 28 TAYEVLESYDFPVGILPKGVTSYTLEATTGDFTATLDTGDDDDSSSSTCEFAI-EGSYSL 86
Query: 91 SFSDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNA 150
+ +TGR+ ++ L G+ V+ F W +I + GD L F VG SA F +F
Sbjct: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLE 146
Query: 151 SLEC 154
S +C
Sbjct: 147 SPQC 150
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 35 GDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSD 94
G TAY+ L FP G+LP V GY L G F V C +L A ++L +
Sbjct: 33 GTSTPTAYEMLERYDFPRGILPVGVEGYELRE-DGSFEVYFPRDCEFML-ARTWLVRYGA 90
Query: 95 RLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
R+ G R++ L G+ V+ F W + + GD L F +G VS FP F S C
Sbjct: 91 RIAGAAASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
>Os04g0443200 Protein of unknown function DUF538 family protein
Length = 165
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 35 GDGDVTAYDELRHR-GFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFS 93
G D EL R G P LLP R Y L G F + L C V AG Y +
Sbjct: 35 GPYDPPTVPELMDRFGLPRALLPVTARRYLLHD-DGSFQLFLDGGC--VAEAGGYRVGYG 91
Query: 94 DRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLE 153
+L+G + R +GL G+RVR F W +T + G E+ +G + FPA F +S
Sbjct: 92 VKLSGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPR 151
Query: 154 CPAKADS 160
C A A +
Sbjct: 152 CIAGAAT 158
>Os03g0693400 Protein of unknown function DUF538 family protein
Length = 177
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 38 DVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLT 97
+ T + L G P GL PA+V ++L + +G AVDL C YL F R+T
Sbjct: 35 NATLSEILPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYA---HYEYLTYFEPRVT 90
Query: 98 GRLDDRRISGLSGIRVRAFFRWWSITGIRADGDE----LVFEVGSVSAKFPARHFNASLE 153
G L ++GLSG++VR F W+ + ++ D + ++G ++ K PA F + E
Sbjct: 91 GVLRYGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHE 150
Query: 154 C 154
C
Sbjct: 151 C 151
>Os01g0913100 Protein of unknown function DUF538 family protein
Length = 171
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 42 YDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRLD 101
++ LR G P GLLPA + + D GSG F L SC G ++ + G +
Sbjct: 34 HEVLRAHGLPRGLLPAGIADFRHDEGSGRFEAALGESCTAQFEVG---LRYNATVAGVIS 90
Query: 102 DRRISGLSGIRVRAFFRWWSITGIRAD---GDELVFEVGSVSAKFPARHFNASLEC 154
RI+ LSG+ + F W+ + GIR D + F+VG V FP F A C
Sbjct: 91 YGRIASLSGVSAQDLFLWFPVRGIRVDVPSSGVIYFDVGVVFKHFPLAVFEAPPPC 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,216,289
Number of extensions: 228466
Number of successful extensions: 644
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 12
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)