Os05g0362500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os05g0362500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.37 | 0.279 | 10.5 | 1.1 | 0.757 | -0.266 | 0.0812 | 1.5 | 0.179 | 12.1 | 20.39 | 2693 | -- | -- |
| 38.46 | 0.289 | 10.5 | 0.867 | 0.756 | -0.624 | 0.0513 | -- | 0.131 | 12 | 19.1 | 2727 | -- | -- |
| 35.39 | 0.277 | 10.5 | 1.1 | 0.758 | -0.267 | -- | 1.49 | 0.178 | 12.1 | 20.3 | 2710 | -- | -- |
| 37.52 | 0.285 | 10.5 | 1 | 0.774 | -0.622 | -- | -- | 0.0699 | 12.1 | 15.5 | 21690 | -- | -- |
| 70.17 | 0.39 | 10.5 | 1.11 | -- | -0.456 | -- | 1.35 | 0.175 | -- | 20.3 | 2398 | -- | -- |
| 44.54 | 0.313 | 10.5 | 0.565 | 0.777 | -- | -0.0171 | -- | -0.013 | 12.2 | -- | -- | -- | -- |
| 44.54 | 0.313 | 10.5 | 0.564 | 0.777 | -- | -- | -- | -0.0131 | 12.2 | -- | -- | -- | -- |
| 72.47 | 0.396 | 10.5 | 0.865 | -- | -0.708 | -- | -- | 0.112 | -- | 19.1 | 2363 | -- | -- |
| 52.83 | 0.34 | 10.6 | -- | 0.77 | 0.141 | -- | -- | -0.0779 | 12.1 | 15.5 | 21690 | -- | -- |
| 82.52 | 0.424 | 10.6 | 0.539 | -- | -- | -- | -- | -0.0246 | -- | -- | -- | -- | -- |
| 52.93 | 0.34 | 10.6 | -- | 0.769 | -- | -- | -- | -0.0759 | 12.1 | -- | -- | -- | -- |
| 81.72 | 0.422 | 10.6 | -- | -- | 0.301 | -- | -- | -0.12 | -- | 26.9 | 47520 | -- | -- |
| 90.19 | 0.443 | 10.6 | -- | -- | -- | -- | -- | -0.0844 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 32.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 33.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 4 | 33.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 6 | 33.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 18 | 33.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 19 | 33.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 25 | 34.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 31 | 34.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 37 | 34.03 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 51 | 34.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 78 | 34.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 100 | 34.18 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 106 | 34.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 130 | 34.25 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 17 | 17 |
| 131 | 34.26 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 134 | 34.27 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 136 | 34.27 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 143 | 34.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 144 | 34.30 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 179 | 34.38 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 183 | 34.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 184 | 34.39 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 185 | 34.39 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 186 | 34.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 187 | 34.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 200 | 34.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 202 | 34.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 214 | 34.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 216 | 34.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 219 | 34.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 229 | 34.49 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |
| 245 | 34.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 400 | 34.95 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 426 | 35.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 460 | 35.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 478 | 35.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 493 | 35.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 526 | 35.20 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 556 | 35.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 649 | 35.42 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 664 | 35.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 667 | 35.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 682 | 35.47 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 693 | 35.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 712 | 35.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 721 | 35.53 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 739 | 35.54 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 745 | 35.55 | humidity | 90 | 14400 | > th | dose independent | sin | 15 | NA |
| 759 | 35.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 770 | 35.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 835 | 35.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 857 | 35.64 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 869 | 35.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 883 | 35.67 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 898 | 35.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 910 | 35.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 953 | 35.71 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 962 | 35.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 966 | 35.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 990 | 35.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 993 | 35.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 14 |