BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0362500 Os05g0362500|AK073380
(182 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0362500 Virulence factor, pectin lyase fold family pro... 209 6e-55
Os05g0362300 Protein of unknown function DUF538 family protein 151 3e-37
Os12g0198000 Protein of unknown function DUF538 family protein 93 1e-19
Os05g0421100 Protein of unknown function DUF538 family protein 91 5e-19
Os11g0241200 Protein of unknown function DUF538 family protein 89 2e-18
Os11g0241700 Protein of unknown function DUF538 family protein 83 9e-17
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 209 bits (533), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/182 (63%), Positives = 115/182 (63%)
Query: 1 MPRLHXXXXXXXXXXXXXXXXXXXKKPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXX 60
MPRLH KKPTAYEVLESYDFPVGILPKGVTSYTLE
Sbjct: 1 MPRLHLLLLAVLAVAAAAAEAAAEKKPTAYEVLESYDFPVGILPKGVTSYTLEATTGDFT 60
Query: 61 XXXXXXXXXXXXXXXCEFAIEGSYSLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVE 120
CEFAIEGSYSLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVE
Sbjct: 61 ATLDTGDDDDSSSSTCEFAIEGSYSLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVE 120
Query: 121 VTRRGDRLEFSVGIASADFTVDNFLESPQXXXXXXXXXXXIXXXXXXXXXXXXXXXRLRG 180
VTRRGDRLEFSVGIASADFTVDNFLESPQ I RLRG
Sbjct: 121 VTRRGDRLEFSVGIASADFTVDNFLESPQCGCGFDCDDDGISSSSSLPPPLEPSLLRLRG 180
Query: 181 AF 182
AF
Sbjct: 181 AF 182
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 88/124 (70%), Gaps = 7/124 (5%)
Query: 26 KPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYS 85
KPTAYE L ++DFP GILPKGV SYTL+ C F+I+GSYS
Sbjct: 27 KPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTST-------CAFSIQGSYS 79
Query: 86 LRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFL 145
LRYQR ++GRIA LT+L+GV+VK+LF W+NIVEVTR GD L FSVGIASADF +DNFL
Sbjct: 80 LRYQRRLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFL 139
Query: 146 ESPQ 149
ESPQ
Sbjct: 140 ESPQ 143
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 25 KKPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSY 84
PTAYE+LE YDFP GILP GV Y L CEF + ++
Sbjct: 35 STPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRD----------CEFMLARTW 84
Query: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNF 144
+RY I G A+G LT L+GV VKVLF WL + EV R GD L F +G S F + +F
Sbjct: 85 LVRYGARIAGAAASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDF 144
Query: 145 LESPQ 149
SP
Sbjct: 145 AHSPH 149
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 25 KKPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSY 84
++P+AYE+LE + FP GILP+GVT YTL CEF ++G Y
Sbjct: 56 EEPSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGE--------CEFEVDGGY 107
Query: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVE-VTRRGDRLEFSVGIASADFTVDN 143
L YQ ITGR+A G +T LRGV V+V I V D L F VG S F VD
Sbjct: 108 RLTYQGRITGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDG 167
Query: 144 FLESPQ 149
F ESPQ
Sbjct: 168 FEESPQ 173
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 27 PTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIE--GSY 84
PTAYE++E Y FP GILP+GV SY L CEF + G+Y
Sbjct: 39 PTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGD----CEFRVGDGGAY 94
Query: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNF 144
LRY R + G G + L GV+VKVLF WL I V R GD L F VG SA F + NF
Sbjct: 95 LLRYGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANF 154
Query: 145 LESPQ 149
+ P+
Sbjct: 155 ADCPR 159
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 27 PTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSL 86
PTAY++L+ + FPVGILP+GV Y L CEF Y L
Sbjct: 38 PTAYDMLQRFGFPVGILPQGVQGYKL---------GDDGSSFEVYLAGDCEFRAAKKYVL 88
Query: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLE 146
Y + G+IA G +T L GV VK F W I EV GD+++ VG+ +A D
Sbjct: 89 HYSSRVAGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAV 148
Query: 147 SPQ 149
SPQ
Sbjct: 149 SPQ 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.141 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,339,338
Number of extensions: 82913
Number of successful extensions: 234
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 6
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)