Os05g0362300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os05g0362300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.58 | 0.264 | 8.93 | 0.542 | 0.518 | -0.497 | -0.119 | 0.558 | 0.129 | 11.5 | 21.2 | 8556 | -- | -- |
| 32.17 | 0.264 | 8.95 | 0.414 | 0.523 | -0.552 | -0.218 | -- | 0.116 | 11.3 | 21.39 | 8581 | -- | -- |
| 31.64 | 0.262 | 8.93 | 0.538 | 0.519 | -0.495 | -- | 0.564 | 0.127 | 11.5 | 21.2 | 8494 | -- | -- |
| 31.97 | 0.263 | 8.96 | 0.419 | 0.509 | -0.561 | -- | -- | 0.0948 | 11.5 | 21 | 8485 | -- | -- |
| 48.14 | 0.323 | 8.93 | 0.546 | -- | -0.536 | -- | 0.567 | 0.151 | -- | 21.39 | 9600 | -- | -- |
| 39 | 0.293 | 9.01 | -0.00142 | 0.53 | -- | -0.112 | -- | -0.112 | 11.6 | -- | -- | -- | -- |
| 39.05 | 0.293 | 9.01 | -0.00607 | 0.531 | -- | -- | -- | -0.112 | 11.6 | -- | -- | -- | -- |
| 48.23 | 0.323 | 8.97 | 0.45 | -- | -0.619 | -- | -- | 0.0972 | -- | 21 | 8096 | -- | -- |
| 34.41 | 0.273 | 8.98 | -- | 0.518 | -0.343 | -- | -- | 0.00774 | 11.5 | 22.52 | 7348 | -- | -- |
| 56.74 | 0.352 | 9.02 | -0.0207 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 39.05 | 0.292 | 9.01 | -- | 0.531 | -- | -- | -- | -0.111 | 11.6 | -- | -- | -- | -- |
| 50.76 | 0.332 | 8.99 | -- | -- | -0.387 | -- | -- | 0.0223 | -- | 22.5 | 5249 | -- | -- |
| 56.76 | 0.352 | 9.02 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.87 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 28.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 11 | 28.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 52 | 29.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 66 | 30.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 80 | 30.37 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 102 | 30.71 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 113 | 30.83 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 131 | 30.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 133 | 30.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 135 | 30.92 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 136 | 30.92 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 143 | 30.95 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 176 | 31.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 179 | 31.07 | humidity | 60.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 217 | 31.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 219 | 31.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 231 | 31.26 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 253 | 31.31 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 268 | 31.36 | humidity | 60.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 269 | 31.36 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 284 | 31.38 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 294 | 31.42 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 297 | 31.43 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 306 | 31.44 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 310 | 31.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 328 | 31.49 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 334 | 31.49 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 343 | 31.52 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 351 | 31.53 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 352 | 31.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 361 | 31.55 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 369 | 31.56 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 380 | 31.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 383 | 31.58 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 391 | 31.59 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 7 |
| 399 | 31.60 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 400 | 31.60 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 412 | 31.61 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 415 | 31.61 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 436 | 31.63 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 467 | 31.65 | wind | 3.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 469 | 31.65 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 492 | 31.66 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 493 | 31.66 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 497 | 31.66 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 552 | 31.68 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 564 | 31.69 | wind | 3.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 565 | 31.69 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 600 | 31.70 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 601 | 31.70 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 621 | 31.71 | temperature | 20.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 624 | 31.71 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 625 | 31.71 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 635 | 31.71 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 638 | 31.71 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 663 | 31.72 | temperature | 20.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 705 | 31.73 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 710 | 31.73 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 711 | 31.73 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 765 | 31.74 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 772 | 31.75 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 803 | 31.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 814 | 31.76 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 830 | 31.76 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 842 | 31.77 | radiation | 20.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 844 | 31.77 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 850 | 31.77 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 6 |
| 861 | 31.77 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 869 | 31.77 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 870 | 31.77 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 884 | 31.78 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 885 | 31.78 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 922 | 31.78 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 947 | 31.79 | atmosphere | 1010.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 958 | 31.79 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 999 | 31.79 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 18 | 13 |