BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0362300 Os05g0362300|AK101894
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0362300 Protein of unknown function DUF538 family protein 271 2e-73
Os05g0362500 Virulence factor, pectin lyase fold family pro... 192 1e-49
Os11g0241200 Protein of unknown function DUF538 family protein 107 4e-24
Os05g0421100 Protein of unknown function DUF538 family protein 102 1e-22
Os12g0198000 Protein of unknown function DUF538 family protein 99 1e-21
Os11g0241700 Protein of unknown function DUF538 family protein 93 9e-20
Os11g0241832 91 4e-19
Os01g0595400 Protein of unknown function DUF538 family protein 81 4e-16
Os03g0692700 Similar to Pherophorin-S precursor 72 3e-13
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 271 bits (693), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 25 ETKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQR 84
ETKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQR
Sbjct: 25 ETKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQR 84
Query: 85 RLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
RLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC
Sbjct: 85 RLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
Query: 145 GCGFDCHDHRD 155
GCGFDCHDHRD
Sbjct: 145 GCGFDCHDHRD 155
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 109/133 (81%), Gaps = 7/133 (5%)
Query: 27 KPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNT-------TSTCAFSIQGSYS 79
KPTAYE L ++DFP GILPKGV SYTL+ TGDFTATL+T +STC F+I+GSYS
Sbjct: 26 KPTAYEVLESYDFPVGILPKGVTSYTLEATTGDFTATLDTGDDDDSSSSTCEFAIEGSYS 85
Query: 80 LRYQRRLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFL 139
LRYQR ++GRIA LT+L+GV+VK+LF W+NIVEVTR GD L FSVGIASADF +DNFL
Sbjct: 86 LRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFL 145
Query: 140 ESPQCGCGFDCHD 152
ESPQCGCGFDC D
Sbjct: 146 ESPQCGCGFDCDD 158
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 28 PTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATL----NTTSTCAFSIQ--GSYSLR 81
PTAYE + + FP GILP+GV SY L G F L N C F + G+Y LR
Sbjct: 39 PTAYEMVERYGFPRGILPEGVESYVLR-PDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLR 97
Query: 82 YQRRLSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLES 141
Y RR++G + +L+GVSVK+LF W+ I V R GD+L F VG SA F + NF +
Sbjct: 98 YGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADC 157
Query: 142 PQCGCGFDC 150
P+C CGFDC
Sbjct: 158 PRCRCGFDC 166
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 ETKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQR 84
+ +P+AYE L F FP GILP+GV YTL + G+F L T C F + G Y L YQ
Sbjct: 55 DEEPSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLG-TGECEFEVDGGYRLTYQG 113
Query: 85 RLSGRIAADRLTNLQGVSVKILFL-WVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQ 143
R++GR+A +T L+GV+V++ + W V D L F VG S F +D F ESPQ
Sbjct: 114 RITGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESPQ 173
Query: 144 CGC 146
C C
Sbjct: 174 CRC 176
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 26 TKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRR 85
+ PTAYE L +DFP GILP GV Y L + D + + C F + ++ +RY R
Sbjct: 35 STPTAYEMLERYDFPRGILPVGVEGYELRE---DGSFEVYFPRDCEFMLARTWLVRYGAR 91
Query: 86 LSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
++G A+ RLT+LQGV VK+LF+W+ + EV R GD L F +G S F + +F SP C
Sbjct: 92 IAGAAASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 28 PTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRRLS 87
PTAY+ L F FP GILP+GV Y L D F L C F Y L Y R++
Sbjct: 38 PTAYDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYL--AGDCEFRAAKKYVLHYSSRVA 95
Query: 88 GRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
G+IAA +T+L+GV VK F W I EV GD++ VG+ +A D SPQC
Sbjct: 96 GQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
>Os11g0241832
Length = 184
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 27 KPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRRL 86
+PT YE L + FPPGILP G YTLD G F TL C +QG Y LRY+ +
Sbjct: 69 EPTVYEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTL--PGDCVVDVQG-YKLRYRSNI 125
Query: 87 SGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
G + A + L GVSVKI +WV I +V G ++ F S D F SP C
Sbjct: 126 YGNVRAGSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTSPSC 183
>Os01g0595400 Protein of unknown function DUF538 family protein
Length = 160
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 29 TAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSI-QGSYSLRYQRRLS 87
TAY+ L FP G+LP V YTLD +GDF L S+C + GSY + RL+
Sbjct: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDL--ASSCRIVLPAGSYLASFSDRLT 97
Query: 88 GRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
GR+ R++ L G+ V+ F W +I + GDEL F VG SA F +F S +C
Sbjct: 98 GRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
>Os03g0692700 Similar to Pherophorin-S precursor
Length = 174
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 30 AYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRRLSGR 89
A + L + P G++P+ + SYT D+ TGDF L TSTC + GS+ ++ + GR
Sbjct: 35 ANDLLPEYGLPRGLIPETIASYTFDNDTGDFEIRL--TSTC-YIWFGSHLAYFEDAIRGR 91
Query: 90 IAADRLTNLQGVSVKILFLWVNIVEVTRHGDE--LGFSVGIASADFGIDNFLESPQCGCG 147
IA +T L G+ + F+WV+I + H D+ + F G S +F E P CG G
Sbjct: 92 IAYGTITGLSGIQAQKFFVWVSITTIVAHPDQGTVEFRAGFISEALPESDFAEVPVCGAG 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,821,700
Number of extensions: 171157
Number of successful extensions: 427
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 9
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)