FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0241700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.19 (0.113) R2 : 0.616
β1 : -13.9 (0.665) R2dD : 1.44 R2D : -0.232
β2 : 2.6 (0.243) R2dC : 0.0988 R2C : -0.0954
β3 : 5.61 (0.366) R2dE : 0.274 R2E : -0.261
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.5 (2.11) R2dD*E : 0.352 R2D*E : -0.857
γ1 : -3.57 (0.26) R2dN8 : 0.357 R2N8 : -0.222
σ : 1.76
deviance : 1425.73
__
_____
C
peak time of C : 7.8
E
wheather : temperature
threshold : 20.59
memory length : 1555
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 6.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1417.95 1.77 7.2 -14 2.53 5.58 -1.81 -22.4 -3.61 7.98 20.46 1542 16.3 6.58
1659.76 1.9 6.65 -9.26 1.85 5.45 -2.13 -- -2.62 9.18 15.21 8395 15.5 2.49
1425.73 1.76 7.19 -13.9 2.6 5.61 -- -22.5 -3.57 7.8 20.59 1555 16.1 6.95
1646.16 1.89 6.57 -9.1 1.88 5.32 -- -- -2.35 8.34 13.42 8362 16.8 0.867
1592.96 1.86 7.21 -14.4 -- 5.5 -- -21.5 -3.55 -- 20.89 1271 15.4 7.88
2244.11 2.22 6.38 -6.85 2.05 -- -0.766 -- -1.18 7.52 -- -- -- --
2245.6 2.22 6.38 -6.87 2.05 -- -- -- -1.18 7.43 -- -- -- --
1780.89 1.97 6.55 -8.49 -- 4.97 -- -- -1.83 -- 17.69 1219 15.8 7.82
3391.56 2.71 6.24 -- 3.13 2.74 -- -- -0.688 7.8 2.575 1753 16.6 2.38
2469.7 2.32 6.43 -6.84 -- -- -- -- -1.15 -- -- -- -- --
3490.81 2.76 6.21 -- 1.99 -- -- -- -0.414 7.66 -- -- -- --
3428.54 2.73 6.38 -- -- 2.47 -- -- -0.85 -- 20.82 1072 17.5 7.32
3704.17 2.84 6.26 -- -- -- -- -- -0.387 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1298.90 wind 5 43200 > th dose independent rect. 15 1
3 1304.29 wind 5 43200 < th dose independent rect. 14 2
6 1317.60 radiation 1 43200 > th dose independent rect. 18 11
10 1322.58 radiation 1 43200 > th dose independent rect. 18 1
26 1328.47 wind 5 43200 < th dose independent rect. 14 7
27 1329.36 wind 5 43200 > th dose independent rect. 14 7
32 1333.84 wind 3 43200 > th dose dependent rect. 14 2
58 1344.43 wind 1 43200 < th dose dependent rect. 24 2
65 1345.52 wind 9 43200 < th dose dependent rect. 12 4
98 1351.98 wind 3 43200 > th dose dependent rect. 13 12
121 1355.87 wind 3 43200 > th dose dependent rect. 12 9
122 1355.98 humidity 80 43200 < th dose independent rect. 20 4
145 1359.76 wind 3 43200 > th dose dependent rect. 10 10
154 1361.16 radiation 1 43200 < th dose independent rect. 18 11
161 1362.27 wind 3 43200 > th dose dependent sin 19 NA
191 1365.16 radiation 1 43200 < th dose independent rect. 18 9
194 1365.32 wind 9 43200 < th dose dependent rect. 11 12
196 1365.36 radiation 1 43200 < th dose independent rect. 18 7
198 1365.39 humidity 80 43200 < th dose dependent rect. 20 3
201 1365.80 radiation 1 43200 < th dose independent rect. 18 1
206 1366.16 radiation 1 43200 < th dose independent rect. 18 4
209 1366.19 wind 5 43200 < th dose independent sin 18 NA
227 1367.34 wind 9 43200 < th dose dependent rect. 9 12
238 1368.08 wind 9 43200 < th dose dependent sin 20 NA
267 1370.55 humidity 80 43200 > th dose independent rect. 20 4
301 1372.87 wind 1 43200 < th dose independent rect. 24 2
306 1373.14 humidity 80 43200 < th dose independent rect. 21 1
388 1379.12 radiation 20 43200 > th dose independent rect. 8 2
400 1380.04 wind 5 43200 > th dose independent sin 18 NA
411 1380.93 wind 3 43200 > th dose independent rect. 9 6
422 1381.58 humidity 80 43200 > th dose independent rect. 21 2
425 1381.89 radiation 30 43200 < th dose independent rect. 9 1
435 1382.59 radiation 20 43200 > th dose dependent rect. 9 1
448 1383.46 humidity 80 43200 > th dose independent rect. 20 7
496 1387.12 humidity 80 43200 < th dose dependent rect. 20 15
524 1389.37 radiation 40 43200 > th dose independent rect. 9 2
531 1390.02 humidity 80 43200 < th dose independent rect. 20 13
581 1392.57 temperature 20 43200 > th dose dependent rect. 8 3
656 1396.54 wind 1 43200 > th dose independent rect. 24 2
658 1396.55 humidity 80 43200 > th dose independent rect. 20 12
688 1398.07 radiation 1 43200 > th dose independent rect. 5 6
691 1398.20 radiation 1 43200 < th dose independent rect. 5 6
713 1399.27 radiation 1 43200 < th dose independent rect. 20 15
714 1399.28 radiation 1 43200 < th dose independent rect. 24 11
729 1399.45 radiation 1 43200 < th dose independent rect. 2 9
899 1403.12 radiation 1 43200 < th dose independent sin 7 NA
901 1403.15 radiation 1 43200 > th dose independent sin 7 NA
993 1406.21 wind 3 43200 > th dose independent rect. 20 1