BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0241700 Os11g0241700|AK068339
(153 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0241700 Protein of unknown function DUF538 family protein 273 4e-74
Os12g0198000 Protein of unknown function DUF538 family protein 114 4e-26
Os11g0241200 Protein of unknown function DUF538 family protein 103 7e-23
Os11g0241832 96 1e-20
Os05g0421100 Protein of unknown function DUF538 family protein 93 6e-20
Os05g0362300 Protein of unknown function DUF538 family protein 87 5e-18
Os05g0362500 Virulence factor, pectin lyase fold family pro... 85 2e-17
Os01g0595400 Protein of unknown function DUF538 family protein 77 4e-15
Os04g0443200 Protein of unknown function DUF538 family protein 72 1e-13
Os03g0693400 Protein of unknown function DUF538 family protein 67 5e-12
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 273 bits (698), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 136/153 (88%), Positives = 136/153 (88%)
Query: 1 MAKLIFLLAMVAFASTLLVSIAGXXXXXXXXXXXXXXXXXYDMLQRFGFPVGILPQGVQG 60
MAKLIFLLAMVAFASTLLVSIAG YDMLQRFGFPVGILPQGVQG
Sbjct: 1 MAKLIFLLAMVAFASTLLVSIAGAADNSTSPSSPSADPTAYDMLQRFGFPVGILPQGVQG 60
Query: 61 YKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAAGSITSLEGVKVKEAFAWFRI 120
YKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAAGSITSLEGVKVKEAFAWFRI
Sbjct: 61 YKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAAGSITSLEGVKVKEAFAWFRI 120
Query: 121 SEVDVDGDQIKLHVGLYTATVAADQLAVSPQCN 153
SEVDVDGDQIKLHVGLYTATVAADQLAVSPQCN
Sbjct: 121 SEVDVDGDQIKLHVGLYTATVAADQLAVSPQCN 153
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAA 100
Y+ML+R+ FP GILP GV+GY+L +DGS FEVY DCEF A+ +++ Y +R+AG A+
Sbjct: 40 YEMLERYDFPRGILPVGVEGYELREDGS-FEVYFPRDCEFMLARTWLVRYGARIAGAAAS 98
Query: 101 GSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQCN 153
G +TSL+GV VK F W + EVD GD + ++G + + A SP C
Sbjct: 99 GRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHCR 151
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGD------CEFRAAK--KYVLHYSS 92
Y+M++R+GFP GILP+GV+ Y L DGS FEV L+GD CEFR Y+L Y
Sbjct: 42 YEMVERYGFPRGILPEGVESYVLRPDGS-FEVRLSGDGNGGGDCEFRVGDGGAYLLRYGR 100
Query: 93 RVAGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
RVAG GSI SLEGV VK FAW I VD GD ++ VG +A A P+C
Sbjct: 101 RVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADCPRC 160
Query: 153 N 153
Sbjct: 161 R 161
>Os11g0241832
Length = 184
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAA 100
Y+ML ++GFP GILP G QGY L SF+V L GDC + Y L Y S + G + A
Sbjct: 73 YEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTLPGDCVVDV-QGYKLRYRSNIYGNVRA 131
Query: 101 GSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
GSI L+GV VK A W I +V+ DG + H + + AD SP C
Sbjct: 132 GSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTSPSC 183
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLA-GDCEFRAAKKYVLHYSSRVAGQIA 99
Y+ML+RFGFP GILP+GV GY L F VYL G+CEF Y L Y R+ G++A
Sbjct: 61 YEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGECEFEVDGGYRLTYQGRITGRVA 120
Query: 100 AGSITSLEGVKVKEAFAWFRISEVDV-DGDQIKLHVGLYTATVAADQLAVSPQCN 153
GSIT L GV V+ + I V V D D + +VG + D SPQC
Sbjct: 121 GGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESPQCR 175
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYL--AGDCEFRAAKKYVLHYSSRVAGQI 98
Y+ L F FP GILP+GV Y L D F L C F Y L Y R++G+I
Sbjct: 31 YEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRRLSGRI 90
Query: 99 AAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
AA +T+L+GV VK F W I EV GD++ VG+ +A D SPQC
Sbjct: 91 AADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYL---------AGDCEFRAAKKYVLHYS 91
Y++L+ + FPVGILP+GV Y L F L + CEF Y L Y
Sbjct: 30 YEVLESYDFPVGILPKGVTSYTLEATTGDFTATLDTGDDDDSSSSTCEFAIEGSYSLRYQ 89
Query: 92 SRVAGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQ 151
+ G+IA G +T L GV VK F W I EV GD+++ VG+ +A D SPQ
Sbjct: 90 RAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLESPQ 149
Query: 152 C 152
C
Sbjct: 150 C 150
>Os01g0595400 Protein of unknown function DUF538 family protein
Length = 160
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 41 YDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEF-RAAKKYVLHYSSRVAGQIA 99
YD L+ GFP+G+LP V+GY L F V LA C A Y+ +S R+ G++
Sbjct: 42 YDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRLD 101
Query: 100 AGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
I+ L G++V+ F W+ I+ + DGD++ VG +A A S +C
Sbjct: 102 DRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
>Os04g0443200 Protein of unknown function DUF538 family protein
Length = 165
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 42 DMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAAG 101
+++ RFG P +LP + Y L DDGS F+++L G C A Y + Y +++G +A G
Sbjct: 44 ELMDRFGLPRALLPVTARRYLLHDDGS-FQLFLDGGCVAEAGG-YRVGYGVKLSGAVAPG 101
Query: 102 SITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
T L GV+V+ FAW ++ V+V G ++ + +G + A SP+C
Sbjct: 102 RATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
>Os03g0693400 Protein of unknown function DUF538 family protein
Length = 177
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 42 DMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRVAGQIAAG 101
++L R+G P G+ P V + L +GS V L G C A +Y+ ++ RV G + G
Sbjct: 40 EILPRYGLPPGLFPASVTAFSLAANGS-LAVDLGGPC--YAHYEYLTYFEPRVTGVLRYG 96
Query: 102 SITSLEGVKVKEAFAWFRISEVDVD----GDQIKLHVGLYTATVAADQLAVSPQCN 153
S+T L GVKV+ WF + V VD + L +G T + AD+ +C
Sbjct: 97 SLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECE 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,963,097
Number of extensions: 135106
Number of successful extensions: 289
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 10
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)