Os03g0693400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os03g0693400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.01 | 0.399 | 10.7 | 1.02 | 0.764 | 0.939 | -0.783 | 0.826 | 0.718 | 2.95 | 54 | 1118 | -- | -- |
| 72.81 | 0.397 | 10.7 | 1.09 | 0.772 | 1.02 | -0.976 | -- | 0.722 | 2.74 | 52 | 1083 | -- | -- |
| 73.88 | 0.4 | 10.7 | 1 | 0.76 | 0.944 | -- | 1.2 | 0.717 | 2.83 | 54 | 1096 | -- | -- |
| 75.64 | 0.405 | 10.7 | 1.12 | 0.737 | 0.93 | -- | -- | 0.738 | 3.61 | 50.16 | 1270 | -- | -- |
| 88.87 | 0.439 | 10.7 | 0.996 | -- | 1.03 | -- | 0.488 | 0.777 | -- | 60 | 1760 | -- | -- |
| 91.91 | 0.449 | 10.7 | 1.06 | 0.6 | -- | -0.969 | -- | 0.693 | 3.82 | -- | -- | -- | -- |
| 94.54 | 0.455 | 10.7 | 1.07 | 0.601 | -- | -- | -- | 0.698 | 4.13 | -- | -- | -- | -- |
| 88.8 | 0.439 | 10.7 | 1.11 | -- | 1.05 | -- | -- | 0.773 | -- | 55.75 | 1758 | -- | -- |
| 108.25 | 0.485 | 10.8 | -- | 0.743 | 0.97 | -- | -- | 0.667 | 3.54 | 62.4 | 1269 | -- | -- |
| 114.14 | 0.499 | 10.7 | 1.1 | -- | -- | -- | -- | 0.714 | -- | -- | -- | -- | -- |
| 124.77 | 0.523 | 10.8 | -- | 0.622 | -- | -- | -- | 0.579 | 4.1 | -- | -- | -- | -- |
| 118.16 | 0.506 | 10.7 | -- | -- | 1.21 | -- | -- | 0.764 | -- | 31.09 | 26297 | -- | -- |
| 145.78 | 0.564 | 10.8 | -- | -- | -- | -- | -- | 0.592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 9 | 70.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 31 | 71.33 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 42 | 71.59 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 72 | 72.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 73 | 72.15 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 89 | 72.36 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 94 | 72.43 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 98 | 72.47 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 111 | 72.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 16 |
| 117 | 72.64 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 134 | 72.75 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 10 |
| 138 | 72.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 146 | 72.79 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 153 | 72.83 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 172 | 72.88 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 208 | 72.96 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 215 | 72.98 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 229 | 72.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 251 | 73.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 262 | 73.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 272 | 73.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 346 | 73.25 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 356 | 73.26 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 364 | 73.27 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 375 | 73.29 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 412 | 73.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 423 | 73.35 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 474 | 73.41 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 500 | 73.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 502 | 73.44 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 533 | 73.48 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 543 | 73.49 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 644 | 73.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 663 | 73.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 673 | 73.64 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 732 | 73.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 741 | 73.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 802 | 73.83 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 808 | 73.84 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 818 | 73.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 829 | 73.86 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 868 | 73.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 871 | 73.89 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 915 | 73.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 934 | 73.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 950 | 73.98 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 955 | 73.99 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 968 | 74.02 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 6 |