BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0693400 Os03g0693400|AK109332
(177 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 118 2e-27
AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162 80 4e-16
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 79 1e-15
AT3G07460.2 | chr3:2384544-2385617 REVERSE LENGTH=272 77 4e-15
AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170 75 1e-14
AT1G61667.1 | chr1:22767674-22768269 FORWARD LENGTH=157 72 2e-13
AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196 70 7e-13
AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180 55 3e-08
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 49 2e-06
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 48 3e-06
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 36 ATLSEILPRYGLPPGLFPASVTAFSLAANGSLAVDLGGPCYAHYEYLTYFEPRVTGVLRY 95
+T+ E+LP+YGLP GL P +VT F+L+ +G V L C ++YL +++ ++G + Y
Sbjct: 34 STVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEFDYLVHYDKTISGRIGY 93
Query: 96 GSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECEDS 154
GS+T L G++V++F +W DV +KVDLPP +Y +G+I +KL D+F++ H C D+
Sbjct: 94 GSITELKGIQVKKFFIWLDVDEIKVDLPPSDS-IYFKVGFINKKLDIDQFKTIHSCHDN 151
>AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162
Length = 161
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 37 TLSEILPRYGLPPGLFPASVTAFSLAANGSLAVDLGGPCYAHYEYLTYFEPRVTGVLRYG 96
T+ ++L GLP GL P V ++ L +G L V L PCYA +E +FE V G L YG
Sbjct: 28 TVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEAVVRGNLSYG 87
Query: 97 SLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECE 152
SL G+ G+ + +W V + V+ P V+ DIG ++L FE P +C+
Sbjct: 88 SLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVF-DIGVAFKQLSLSLFEDPPKCK 142
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 38 LSEILPRYGLPPGLFPASVTAFSLAANGSLAVDLGGPCYAHY-EYLTYFEPRVTGVLRYG 96
+ ++LPRYG P GL P +V +++++ +G VDL CY + + L ++ + G L YG
Sbjct: 54 IHDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLSYG 113
Query: 97 SLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECE 152
S+ + G++ + +W + ++ D P V +G++++ LPA FE+ C
Sbjct: 114 SVKDVRGIQAKEAFLWLPITAMESD--PSSATVVFSVGFVSKTLPASMFENVPSCS 167
>AT3G07460.2 | chr3:2384544-2385617 REVERSE LENGTH=272
Length = 271
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 34 KNATLSEILPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYAHYEYLTYFEPRVTGV 92
+N ++ EIL GLP GLFP V F++ G +V L C A YE +++ V+G
Sbjct: 26 ENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIVSGT 85
Query: 93 LRYGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHEC 151
+ Y + LSG+ + +W V ++VD+P ++ D+G + ++ FE+P +C
Sbjct: 86 IGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSG-LIFFDVGVLRKQYSLSLFETPRDC 143
>AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170
Length = 169
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 34 KNATLSEILPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYAHYEYLTYFEPRVTGV 92
+ T+ EIL GLP G+FP V F+ G +V L C A YE +++ +TG
Sbjct: 27 ETETIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITGT 86
Query: 93 LRYGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHEC 151
+ ++ LSG+ + +WF V ++VD+P +Y D+G + ++ FE+P +C
Sbjct: 87 IGSAQISDLSGISAQELFLWFPVKGIRVDVPSSG-LIYFDVGVVRKQYSLSLFETPRDC 144
>AT1G61667.1 | chr1:22767674-22768269 FORWARD LENGTH=157
Length = 156
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 35 NATLSEILPRYGLPPGLFPASVTAFSLA-ANGSLAVDLGGPCYAHYEYLTYFEPRVTGVL 93
+++ +L GLP GLFP +V ++SL G L V L PC+A +E YF+ + L
Sbjct: 19 QSSIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANL 78
Query: 94 RYGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHEC 151
YG L GL G+ +W V + V+ P V DIG +++ FE P C
Sbjct: 79 SYGGLVGLEGLTQEELFLWLPVKGIAVN-DPSSGLVLFDIGVAHKQISRSLFEDPPVC 135
>AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196
Length = 195
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 42 LPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYAHYEYLTYFEPRVTGVLRYGSLTG 100
L LP G+ P VT FS+ G V L PC A +E +F+ ++GVL G +
Sbjct: 35 LRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSDGRIGN 94
Query: 101 LSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHEC 151
LSGV + +WF V + VD P ++ D+G ++L FESP +C
Sbjct: 95 LSGVTQKELFLWFAVKGIHVD-PQSSGLIHFDVGVADKQLSLSLFESPRDC 144
>AT2G03350.1 | chr2:1019733-1021071 REVERSE LENGTH=180
Length = 179
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 37 TLSEILPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYAHYE--YLTYFEPRVTGVL 93
+L ++L Y LPPGLFP ++ + L V PC ++ + RV G+L
Sbjct: 58 SLPDLLKEYNLPPGLFPQNIICYEFDETKNKLTVFFSSPCEVTFKDGSAIRYATRVKGIL 117
Query: 94 RYGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHEC 151
G L G+ G+K + LVW V + V+ + ++ G + + D +++PH+
Sbjct: 118 LRGKLMGVEGMKT-KVLVWVKVTTISVESSKSDK-LWFTAG-VKKSRSKDVYDTPHDA 172
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 42 LPRYGLPPGLFPASVTAFSL-AANGSLAVDLGGPCYAHY---EYLTYFEPRVTGVLRYGS 97
L +G P GL P SV + L +G ++ L G C Y+ + +VTG + G
Sbjct: 35 LTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGACKITLPPDNYIATYSNKVTGRISQGK 94
Query: 98 LTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECEDSK 155
+ L G++VR F + + ++ + ++ IT K P+ F+ +CE +
Sbjct: 95 IAELQGIRVRAFFKSWSITGIR----SSGDNLVFEVAGITAKYPSKNFDESLDCEGKR 148
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 37 TLSEILPRYGLPPGLFPASVTAFSLA-ANGSLAVDLGGPC-YAHYEYLTYFEPRVTGVLR 94
T + + Y LPPG+ P V + L G+ V C + Y ++ ++GV+
Sbjct: 28 TAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKSTISGVIS 87
Query: 95 YGSLTGLSGVKVRRFLVWFDVVRVKVDLPPPPRYVYLDIGWITRKLPADEFESPHECEDS 154
G + L GV V+ W ++ V +D + +G + PA FE +C
Sbjct: 88 PGHVKNLKGVSVKVLFFWVNIAEVSLDGAD----LDFSVGIASASFPAANFEESPQCGCG 143
Query: 155 KKCR 158
C
Sbjct: 144 FDCN 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,480,857
Number of extensions: 146950
Number of successful extensions: 389
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 10
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)