Os01g0595400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os01g0595400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.96 | 0.176 | 12.6 | 0.565 | 0.209 | 1.19 | 0.0907 | 3.4 | 0.25 | 9.42 | 0.4594 | 1446 | -- | -- |
| 18.25 | 0.199 | 12.5 | 0.772 | 0.157 | 0.246 | 0.213 | -- | 0.287 | 8.24 | 54.51 | 2686 | -- | -- |
| 13.96 | 0.174 | 12.6 | 0.561 | 0.193 | 1.23 | -- | 3.52 | 0.248 | 9.35 | 0.3749 | 1440 | -- | -- |
| 18.19 | 0.199 | 12.5 | 0.796 | 0.158 | 0.24 | -- | -- | 0.287 | 9.45 | 114.3 | 2712 | -- | -- |
| 15.26 | 0.182 | 12.6 | 0.591 | -- | 1.22 | -- | 3.35 | 0.256 | -- | 0.3515 | 1406 | -- | -- |
| 19.71 | 0.208 | 12.5 | 0.789 | 0.201 | -- | 0.0724 | -- | 0.247 | 9.71 | -- | -- | -- | -- |
| 19.72 | 0.208 | 12.5 | 0.792 | 0.2 | -- | -- | -- | 0.247 | 9.81 | -- | -- | -- | -- |
| 18.18 | 0.199 | 12.5 | 0.723 | -- | 0.481 | -- | -- | 0.367 | -- | 4.993 | 9712 | -- | -- |
| 32.73 | 0.266 | 12.5 | -- | 0.16 | 0.368 | -- | -- | 0.274 | 9.43 | 129.8 | 9674 | -- | -- |
| 22.12 | 0.22 | 12.5 | 0.79 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 36.26 | 0.282 | 12.5 | -- | 0.199 | -- | -- | -- | 0.159 | 9.51 | -- | -- | -- | -- |
| 34.13 | 0.272 | 12.5 | -- | -- | 0.411 | -- | -- | 0.288 | -- | 159.8 | 9648 | -- | -- |
| 38.58 | 0.29 | 12.5 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 3 | 13.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 4 | 13.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 18 |
| 12 | 13.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 14 | 13.50 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 23 | 13.59 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 18 |
| 33 | 13.62 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 39 | 13.63 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 12 |
| 49 | 13.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 50 | 13.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 51 | 13.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 62 | 13.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 63 | 13.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 70 | 13.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 74 | 13.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 13 |
| 75 | 13.66 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 76 | 13.66 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 81 | 13.67 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 83 | 13.67 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 106 | 13.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 109 | 13.70 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 110 | 13.70 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 130 | 13.72 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 147 | 13.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 189 | 13.76 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 193 | 13.77 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 194 | 13.77 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 197 | 13.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 198 | 13.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 211 | 13.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 219 | 13.78 | radiation | 1.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 228 | 13.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 234 | 13.79 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 279 | 13.81 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 12 | 14 |
| 289 | 13.82 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 19 | NA |
| 305 | 13.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 310 | 13.83 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 12 | 11 |
| 320 | 13.84 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 338 | 13.85 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 339 | 13.85 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 341 | 13.85 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 12 | 8 |
| 363 | 13.86 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 390 | 13.87 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 402 | 13.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 411 | 13.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 430 | 13.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 433 | 13.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 434 | 13.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 459 | 13.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 503 | 13.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 516 | 13.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 576 | 13.95 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 673 | 13.98 | radiation | 1.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 698 | 13.99 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 707 | 13.99 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 745 | 14.00 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 753 | 14.00 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 829 | 14.03 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 832 | 14.03 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 851 | 14.04 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 856 | 14.04 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 2 |
| 860 | 14.04 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 904 | 14.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 940 | 14.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 941 | 14.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 965 | 14.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 967 | 14.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |