BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0595400 Os01g0595400|AK068184
(160 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 139 6e-34
AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167 89 7e-19
AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168 86 8e-18
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 77 4e-15
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 72 1e-13
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 70 6e-13
AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150 66 8e-12
AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170 62 2e-10
AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196 59 8e-10
AT3G07460.2 | chr3:2384544-2385617 REVERSE LENGTH=272 58 2e-09
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 91/120 (75%)
Query: 41 AYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRL 100
A+ EL + GFP+GLLP +V+ Y L+ SGDF++ L +C+I LP +Y+A++S+++TGR+
Sbjct: 31 AHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGACKITLPPDNYIATYSNKVTGRI 90
Query: 101 DDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLECPAKADS 160
+I+ L GIRVRAFF+ WSITGIR+ GD LVFEV ++AK+P+++F+ SL+C K S
Sbjct: 91 SQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSKNFDESLDCEGKRSS 150
>AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167
Length = 166
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 33 AGGDGDV-TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLAS 91
A D D+ TAY L+ FP+G+LP V Y LD +G F SC L GSY
Sbjct: 23 AANDDDIPTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFAL-QGSYQLD 81
Query: 92 FSDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNAS 151
+ ++G + + +I+ L+G++V+ F W +I + +GDEL F VG SA F F S
Sbjct: 82 YKSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYES 141
Query: 152 LEC 154
+C
Sbjct: 142 PQC 144
>AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168
Length = 167
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGR 99
TAY L+ FP+G+LP V Y LD+ +G F SC L GSY ++ ++G
Sbjct: 31 TAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNL-VGSYQLNYKSTISGY 89
Query: 100 LDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
+ + ++ L+G++V+ F W +I + +GDE+ F VG SA F + F S +C
Sbjct: 90 ISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLESPQC 144
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGR 99
TAYD ++ P G+LP V Y L+ +G+F V +C + SY + ++G
Sbjct: 28 TAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTI--QSYQLKYKSTISGV 85
Query: 100 LDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLEC 154
+ + L G+ V+ F W +I + DG +L F VG SA FPA +F S +C
Sbjct: 86 ISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEESPQC 140
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 42 YDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRLD 101
+D L GFP GLLP NV+ YT+ S GDF VDL SSC + L + + G+L
Sbjct: 55 HDLLPRYGFPKGLLPNNVKSYTI-SDDGDFTVDLISSCYVKF--SDQLVFYGKNIAGKLS 111
Query: 102 DRRISGLSGIRVRAFFRWWSITGIRADGDE--LVFEVGSVSAKFPARHFNASLEC 154
+ + GI+ + F W IT + +D +VF VG VS PA F C
Sbjct: 112 YGSVKDVRGIQAKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPASMFENVPSC 166
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGR 99
T Y+ L G P GLLP V +TL S G F V L +SC I YL + ++GR
Sbjct: 35 TVYELLPKYGLPSGLLPDTVTDFTL-SDDGRFVVHLPNSCEIEF---DYLVHYDKTISGR 90
Query: 100 LDDRRISGLSGIRVRAFFRWWSITGIRAD---GDELVFEVGSVSAKFPARHFNASLEC 154
+ I+ L GI+V+ FF W + I+ D D + F+VG ++ K F C
Sbjct: 91 IGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSC 148
>AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150
Length = 149
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 33 AGGDGDVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASF 92
G + Y L + P G+LP V Y L+ +G F V ++C+ SY +
Sbjct: 17 VSGQKKRSVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQ--FSIDSYKVKY 74
Query: 93 SDRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASL 152
++G + R+ L G+ V+ F W +I+ + DGD++ F VG+ S +F +++F S
Sbjct: 75 KPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSP 134
Query: 153 EC 154
+C
Sbjct: 135 KC 136
>AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170
Length = 169
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 40 TAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGR 99
T Y+ L G P G+ P VR +T D +G F+V L +C + + +TG
Sbjct: 30 TIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIH---YDANITGT 86
Query: 100 LDDRRISGLSGIRVRAFFRWWSITGIRADGDE---LVFEVGSVSAKFPARHFNASLEC 154
+ +IS LSGI + F W+ + GIR D + F+VG V ++ F +C
Sbjct: 87 IGSAQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDC 144
>AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196
Length = 195
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 38 DVTAYDELRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLT 97
D + YD LR P G++P V +++D +G F V L C + F ++
Sbjct: 28 DPSFYDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFH---FDYNIS 84
Query: 98 GRLDDRRISGLSGIRVRAFFRWWSITGIRADGDE---LVFEVGSVSAKFPARHFNASLEC 154
G L D RI LSG+ + F W+++ GI D + F+VG + F + +C
Sbjct: 85 GVLSDGRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFESPRDC 144
Query: 155 PA 156
A
Sbjct: 145 TA 146
>AT3G07460.2 | chr3:2384544-2385617 REVERSE LENGTH=272
Length = 271
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 45 LRHRGFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFSDRLTGRLDDRR 104
L G PLGL P V+G+T++ +G F+V L SC+ + + + ++G + +
Sbjct: 34 LLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELH---YDEIVSGTIGYAQ 90
Query: 105 ISGLSGIRVRAFFRWWSITGIRADGDE---LVFEVGSVSAKFPARHFNASLECPA 156
I LSGI + F W + GIR D + F+VG + ++ F +C A
Sbjct: 91 IRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRDCVA 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,033,980
Number of extensions: 122125
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 10
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)