Os12g0198000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os12g0198000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.15 | 0.402 | 9.38 | 0.186 | 0.503 | 0.756 | 1.43 | 0.182 | 0.248 | 2.29 | 1010 | 13770 | -- | -- |
| 71.66 | 0.394 | 9.38 | 0.275 | 0.51 | 0.895 | 1.48 | -- | 0.213 | 2.33 | 1009 | 13719 | -- | -- |
| 79.89 | 0.416 | 9.38 | 0.155 | 0.539 | 0.759 | -- | 0.183 | 0.261 | 2.99 | 1010 | 13744 | -- | -- |
| 78.51 | 0.413 | 9.38 | 0.224 | 0.54 | 0.933 | -- | -- | 0.213 | 3.19 | 1009 | 14344 | -- | -- |
| 95.81 | 0.456 | 9.38 | 0.16 | -- | 0.739 | -- | 0.166 | 0.258 | -- | 1010 | 13648 | -- | -- |
| 95.69 | 0.459 | 9.43 | 0.0154 | 0.502 | -- | 1.37 | -- | -0.00392 | 2.33 | -- | -- | -- | -- |
| 101.81 | 0.473 | 9.43 | -0.0236 | 0.529 | -- | -- | -- | -0.0135 | 3.19 | -- | -- | -- | -- |
| 95.3 | 0.455 | 9.38 | 0.242 | -- | 0.917 | -- | -- | 0.224 | -- | 1009 | 14360 | -- | -- |
| 79.79 | 0.416 | 9.39 | -- | 0.548 | 0.898 | -- | -- | 0.187 | 3.22 | 1009 | 14345 | -- | -- |
| 117.68 | 0.507 | 9.43 | -0.00109 | -- | -- | -- | -- | 0.000365 | -- | -- | -- | -- | -- |
| 101.82 | 0.472 | 9.43 | -- | 0.528 | -- | -- | -- | -0.0109 | 3.19 | -- | -- | -- | -- |
| 96.79 | 0.458 | 9.39 | -- | -- | 0.873 | -- | -- | 0.188 | -- | 1009 | 14389 | -- | -- |
| 117.68 | 0.506 | 9.43 | -- | -- | -- | -- | -- | 0.000487 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.47 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 2 | 71.50 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 4 | 71.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 5 | 71.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 9 | 71.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 16 | 72.05 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 17 | 72.05 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 27 | 72.17 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 34 | 72.21 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 56 | 72.28 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 65 | 72.31 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 80 | 72.35 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 106 | 72.39 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 114 | 72.41 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 22 | NA |
| 142 | 72.44 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 214 | 72.50 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 215 | 72.50 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 11 | 18 |
| 258 | 72.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 310 | 72.55 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 367 | 72.57 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 396 | 72.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 528 | 72.72 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 1 | 8 |
| 595 | 72.79 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 3 | NA |
| 599 | 72.79 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 606 | 72.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 657 | 72.83 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 668 | 72.84 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 689 | 72.86 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 695 | 72.86 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 697 | 72.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 707 | 72.87 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 721 | 72.88 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 723 | 72.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 755 | 72.91 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 780 | 72.93 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 3 | NA |
| 861 | 72.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 965 | 73.04 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 15 | 21 |