BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0198000 Os12g0198000|AK106324
(167 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0198000 Protein of unknown function DUF538 family protein 231 2e-61
Os11g0241200 Protein of unknown function DUF538 family protein 127 3e-30
Os11g0241700 Protein of unknown function DUF538 family protein 103 5e-23
Os05g0421100 Protein of unknown function DUF538 family protein 89 2e-18
Os05g0362500 Virulence factor, pectin lyase fold family pro... 86 2e-17
Os05g0362300 Protein of unknown function DUF538 family protein 82 2e-16
Os11g0241832 80 5e-16
Os04g0443200 Protein of unknown function DUF538 family protein 78 4e-15
Os03g0393600 70 9e-13
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/128 (89%), Positives = 114/128 (89%)
Query: 30 SGNGTSTPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVXXX 89
SGNGTSTPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLV
Sbjct: 30 SGNGTSTPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVRYG 89
Query: 90 XXXXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPH 149
LTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPH
Sbjct: 90 ARIAGAAASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPH 149
Query: 150 CRGYDHLP 157
CRGYDHLP
Sbjct: 150 CRGYDHLP 157
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Query: 30 SGNGTSTPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRD------CEFMLAR- 82
S N T+TPTAYEM+ERY FPRGILP GVE Y LR DGSFEV D CEF +
Sbjct: 32 SANLTATPTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDG 91
Query: 83 -TWLVXXXXXXXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPL 141
+L+ + SL+GV VKVLF WL +G VDR+GD L F++GP+S +FPL
Sbjct: 92 GAYLLRYGRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPL 151
Query: 142 SDFAHSPHCR-GYD 154
++FA P CR G+D
Sbjct: 152 ANFADCPRCRCGFD 165
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 34 TSTPTAYEMLERYDFPRGILPVGVEGYELREDGS-FEVYFPRDCEFMLARTWLVXXXXXX 92
++ PTAY+ML+R+ FP GILP GV+GY+L +DGS FEVY DCEF A+ +++
Sbjct: 35 SADPTAYDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSRV 94
Query: 93 XXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHCR 151
+TSL+GV VK F W + EVD GD + ++G + + A SP C
Sbjct: 95 AGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQCN 153
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 33 GTSTPTAYEMLERYDFPRGILPVGVEGYELR-EDGSFEVYFPR-DCEFMLARTWLVXXXX 90
G P+AYEMLER+ FPRGILP GV GY LR DG F VY +CEF + + +
Sbjct: 54 GDEEPSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGECEFEVDGGYRLTYQG 113
Query: 91 XXXXXXXXXXLTSLQGVYVKVLFV-WLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPH 149
+T L+GV V+V + W V D L FY+GP+S +FP+ F SP
Sbjct: 114 RITGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESPQ 173
Query: 150 CR 151
CR
Sbjct: 174 CR 175
>Os05g0362500 Virulence factor, pectin lyase fold family protein
Length = 182
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 37 PTAYEMLERYDFPRGILPVGVEGYELR----------EDGSFEVYFPRDCEFMLARTWLV 86
PTAYE+LE YDFP GILP GV Y L + G + CEF + ++ +
Sbjct: 27 PTAYEVLESYDFPVGILPKGVTSYTLEATTGDFTATLDTGDDDDSSSSTCEFAIEGSYSL 86
Query: 87 XXXXXXXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAH 146
LT L+GV VKVLF WL + EV R GD L F +G S F + +F
Sbjct: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLE 146
Query: 147 SPHC 150
SP C
Sbjct: 147 SPQC 150
>Os05g0362300 Protein of unknown function DUF538 family protein
Length = 173
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 35 STPTAYEMLERYDFPRGILPVGVEGYELRE---DGSFEVYFPRDCEFMLARTWLVXXXXX 91
+ PTAYE L +DFP GILP GV Y L + D + + C F + ++ +
Sbjct: 26 TKPTAYEALATFDFPPGILPKGVVSYTLDDATGDFTATLNTTSTCAFSIQGSYSLRYQRR 85
Query: 92 XXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
LT+LQGV VK+LF+W+ + EV R GD L F +G S F + +F SP C
Sbjct: 86 LSGRIAADRLTNLQGVSVKILFLWVNIVEVTRHGDELGFSVGIASADFGIDNFLESPQC 144
>Os11g0241832
Length = 184
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 37 PTAYEMLERYDFPRGILPVGVEGYELRE-DGSFEVYFPRDCEFMLARTWLVXXXXXXXXX 95
PT YEML +Y FP GILP G +GY L DGSF+V P DC + + + +
Sbjct: 70 PTVYEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTLPGDC-VVDVQGYKLRYRSNIYGN 128
Query: 96 XXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHCR 151
+ L GV VK+ VW+ + +V+ G ++F+ +S S P F SP C+
Sbjct: 129 VRAGSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTSPSCQ 184
>Os04g0443200 Protein of unknown function DUF538 family protein
Length = 165
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 37 PTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVXXXXXXXXXX 96
PT E+++R+ PR +LPV Y L +DGSF+++ C A + V
Sbjct: 40 PTVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGGC-VAEAGGYRVGYGVKLSGAV 98
Query: 97 XXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
T L GV V+VLF W+PV V+ +G ++ +GP+ SFP + F SP C
Sbjct: 99 APGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
>Os03g0393600
Length = 128
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 35 STPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFML---ARTWLVXXXXX 91
S+ T Y++L++ + PRG++P GV Y L DG EV P +C F + +
Sbjct: 19 SSATVYDVLQQNNLPRGLIPQGVTSYVLHPDGHLEVTLPSECNFAVTVGGSPYKFRFDSK 78
Query: 92 XXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
++ + GV V +VD +G+ L+F +G S SFP+SDF SP C
Sbjct: 79 FVGLIKSGSISEINGVRV----------QVDHAGNQLTFKVGTSSISFPISDFTSSPVC 127
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,472,517
Number of extensions: 149437
Number of successful extensions: 262
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 9
Length of query: 167
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 74
Effective length of database: 12,179,899
Effective search space: 901312526
Effective search space used: 901312526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)