Os04g0443200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os04g0443200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.66 | 0.395 | 10 | 0.0307 | 1.05 | 0.884 | -0.506 | -0.111 | -0.109 | 16 | 76.94 | 27 | -- | -- |
| 70.64 | 0.391 | 10 | 0.0311 | 1.06 | 0.886 | -0.538 | -- | -0.11 | 16 | 76.91 | 23 | -- | -- |
| 71.16 | 0.393 | 10 | 0.0226 | 1.05 | 0.895 | -- | -0.411 | -0.112 | 16.1 | 77.66 | 23 | -- | -- |
| 71.45 | 0.394 | 10 | 0.0241 | 1.05 | 0.88 | -- | -- | -0.113 | 16.1 | 77.34 | 23 | -- | -- |
| 102.4 | 0.471 | 10 | -0.122 | -- | 1.74 | -- | -1.28 | -0.106 | -- | 85.49 | 129 | -- | -- |
| 81.95 | 0.424 | 10 | 0.0758 | 1.37 | -- | -0.442 | -- | -0.148 | 15.6 | -- | -- | -- | -- |
| 82.53 | 0.425 | 10 | 0.0687 | 1.37 | -- | -- | -- | -0.15 | 15.7 | -- | -- | -- | -- |
| 102.28 | 0.471 | 10 | 0.0186 | -- | 1.68 | -- | -- | -0.189 | -- | 107.5 | 138 | -- | -- |
| 71.47 | 0.394 | 10 | -- | 1.05 | 0.881 | -- | -- | -0.116 | 16.1 | 77.38 | 23 | -- | -- |
| 186.93 | 0.639 | 10 | 0.0114 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 82.66 | 0.425 | 10 | -- | 1.37 | -- | -- | -- | -0.158 | 15.7 | -- | -- | -- | -- |
| 102.29 | 0.471 | 10 | -- | -- | 1.68 | -- | -- | -0.191 | -- | 116.7 | 138 | -- | -- |
| 186.93 | 0.638 | 10 | -- | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 2 | 62.10 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 4 | 62.48 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 6 | 62.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 8 |
| 7 | 62.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 9 | 62.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 10 | 62.96 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 11 | 62.97 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 16 | 63.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 22 | 63.21 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 26 | 63.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 27 | 63.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 28 | 63.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 29 | 63.33 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 30 | 63.33 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 16 |
| 32 | 63.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 33 | 63.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 16 |
| 34 | 63.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 16 |
| 39 | 63.50 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 40 | 63.51 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 16 |
| 49 | 63.65 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 50 | 63.68 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 51 | 63.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 16 |
| 59 | 63.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 74 | 64.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 79 | 64.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 84 | 64.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 85 | 64.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 86 | 64.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 87 | 64.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 94 | 64.38 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 102 | 64.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 16 |
| 104 | 64.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 107 | 64.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 109 | 64.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 8 |
| 112 | 64.61 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 133 | 64.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 8 |
| 135 | 64.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 148 | 64.93 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 150 | 64.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 152 | 64.96 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 155 | 64.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 16 |
| 158 | 64.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 163 | 65.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 164 | 65.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 165 | 65.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 171 | 65.05 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 16 |
| 173 | 65.05 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 174 | 65.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 8 |
| 175 | 65.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 8 |
| 176 | 65.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 192 | 65.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 214 | 65.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 217 | 65.28 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 231 | 65.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 16 |
| 237 | 65.41 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 238 | 65.41 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 241 | 65.42 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 248 | 65.45 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 261 | 65.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 268 | 65.57 | radiation | 10.0 | 90 | < th | dose dependent | sin | 20 | NA |
| 277 | 65.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 16 |
| 284 | 65.65 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 286 | 65.65 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 292 | 65.68 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 296 | 65.70 | humidity | 80.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 299 | 65.71 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 300 | 65.71 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 324 | 65.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 6 |
| 325 | 65.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 327 | 65.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 329 | 65.83 | radiation | 10.0 | 10 | < th | dose dependent | sin | 18 | NA |
| 346 | 65.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 347 | 65.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 348 | 65.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 351 | 65.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 352 | 65.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 355 | 65.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 365 | 65.95 | radiation | 1.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 376 | 65.99 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 379 | 66.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 18 |
| 381 | 66.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 383 | 66.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 384 | 66.03 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 385 | 66.03 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 388 | 66.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 389 | 66.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 395 | 66.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 397 | 66.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 415 | 66.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 422 | 66.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 6 |
| 424 | 66.10 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 16 |
| 426 | 66.11 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 454 | 66.15 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 8 |
| 460 | 66.17 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 466 | 66.19 | radiation | 1.0 | 10 | > th | dose independent | sin | 7 | NA |
| 470 | 66.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 471 | 66.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 472 | 66.19 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 474 | 66.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 17 |
| 475 | 66.20 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 479 | 66.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 491 | 66.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 495 | 66.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 505 | 66.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 523 | 66.33 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 527 | 66.35 | radiation | 1.0 | 30 | > th | dose independent | sin | 20 | NA |
| 544 | 66.40 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 551 | 66.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 573 | 66.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 580 | 66.45 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 636 | 66.57 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 637 | 66.57 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 648 | 66.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 678 | 66.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 703 | 66.77 | temperature | 30.0 | 10 | < th | dose independent | rect. | 16 | 8 |
| 711 | 66.79 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 727 | 66.83 | humidity | 60.0 | 10 | > th | dose independent | rect. | 16 | 8 |
| 732 | 66.85 | radiation | 1.0 | 30 | < th | dose independent | sin | 19 | NA |
| 735 | 66.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 741 | 66.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 744 | 66.87 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 774 | 66.95 | radiation | 1.0 | 10 | < th | dose independent | sin | 7 | NA |
| 792 | 67.00 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 816 | 67.02 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 9 |
| 825 | 67.04 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 828 | 67.05 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 831 | 67.06 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 856 | 67.13 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 857 | 67.13 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 871 | 67.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 873 | 67.17 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 875 | 67.18 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 889 | 67.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 16 |
| 900 | 67.24 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 926 | 67.28 | radiation | 1.0 | 30 | > th | dose independent | rect. | 11 | 8 |
| 942 | 67.29 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 943 | 67.29 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 944 | 67.29 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 945 | 67.29 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 948 | 67.29 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 955 | 67.29 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 957 | 67.29 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 959 | 67.29 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 983 | 67.33 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 2 |