BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0443200 Os04g0443200|AK107991
(165 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 81 3e-16
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 77 3e-15
AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167 70 4e-13
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 69 9e-13
AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168 67 4e-12
AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150 67 4e-12
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 63 7e-11
AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162 58 2e-09
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 40 PTVPELMDRFGLPRALLPVTARRYLLH-DDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAV 98
PT + + + LP +LP Y L+ G+F+++ + C Y++ Y +SG +
Sbjct: 27 PTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKSTISGVI 86
Query: 99 APGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRCIAG 155
+PG L GV V+VLF WV + V + G ++ S+G SFPAA F+ SP+C G
Sbjct: 87 SPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEESPQCGCG 143
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 42 VPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAPG 101
+ +L+ R+G P+ LLP + Y + DDG F + L C + V YG ++G ++ G
Sbjct: 54 IHDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLSYG 113
Query: 102 RATGLGGVRVRVLFAWVPVTAVEV--AGGEVTVSLGPIKKSFPAAGFKSSPRC 152
+ G++ + F W+P+TA+E + V S+G + K+ PA+ F++ P C
Sbjct: 114 SVKDVRGIQAKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPASMFENVPSC 166
>AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167
Length = 166
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 38 DPPTVPELMDRFGLPRALLPVTARRYLLHDD-GSFQLFLDGGC-VAEAGGYRVGYGVKLS 95
D PT L+ + P +LP Y L G F + + C A G Y++ Y +S
Sbjct: 28 DIPTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTIS 87
Query: 96 GAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
G ++ + T L GV+V+VLF W+ + V G E+ S+G +F F SP+C
Sbjct: 88 GYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYESPQC 144
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 41 TVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAP 100
TV EL+ ++GLP LLP T + L DDG F + L C E Y V Y +SG +
Sbjct: 35 TVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEF-DYLVHYDKTISGRIGY 93
Query: 101 GRATGLGGVRVRVLFAWVPVTAVEVA---GGEVTVSLGPIKKSFPAAGFKSSPRC 152
G T L G++V+ F W+ V ++V + +G I K FK+ C
Sbjct: 94 GSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSC 148
>AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168
Length = 167
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 38 DPPTVPELMDRFGLPRALLPVTARRYLLHDD-GSFQLFLDGGCVAE-AGGYRVGYGVKLS 95
D PT L+ + P +LP Y L G F + + C G Y++ Y +S
Sbjct: 28 DTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLNYKSTIS 87
Query: 96 GAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
G ++ + L GV+V+VLF W+ + V G E+ S+G +F F SP+C
Sbjct: 88 GYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLESPQC 144
>AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150
Length = 149
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 41 TVPELMDRFGLPRALLPVTARRYLLHD-DGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVA 99
+V ++++ + LPR +LP Y L+ G F++ + C Y+V Y +SG +
Sbjct: 24 SVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSIDSYKVKYKPVISGIIT 83
Query: 100 PGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
GR L GV V+VLF W+ ++ V G +V +G + F + F SP+C
Sbjct: 84 RGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSPKC 136
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 46 MDRFGLPRALLPVTARRYLLHD-DGSFQLFLDGGCVAEA--GGYRVGYGVKLSGAVAPGR 102
+ G P LLP++ + Y L+ G F LFL+G C Y Y K++G ++ G+
Sbjct: 35 LTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGACKITLPPDNYIATYSNKVTGRISQGK 94
Query: 103 ATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
L G+RVR F +T + +G + + I +P+ F S C
Sbjct: 95 IAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSKNFDESLDC 144
>AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162
Length = 161
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 40 PTVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVA 99
PTV +++ GLP LLP Y+LH+DG ++FL C A+ V + + G ++
Sbjct: 27 PTVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFET-NVHFEAVVRGNLS 85
Query: 100 PGRATGLGGVRVRVLFAWVPVTAVEVAG---GEVTVSLGPIKKSFPAAGFKSSPRC 152
G G+ G+ + LF W+ V + V G + +G K + F+ P+C
Sbjct: 86 YGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKC 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,158,484
Number of extensions: 123977
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 8
Length of query: 165
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 74
Effective length of database: 8,611,713
Effective search space: 637266762
Effective search space used: 637266762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)