BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0443200 Os04g0443200|AK107991
(165 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0443200 Protein of unknown function DUF538 family protein 266 7e-72
Os12g0198000 Protein of unknown function DUF538 family protein 96 9e-21
Os11g0241832 94 4e-20
Os11g0241200 Protein of unknown function DUF538 family protein 86 1e-17
Os11g0241700 Protein of unknown function DUF538 family protein 77 7e-15
Os05g0421100 Protein of unknown function DUF538 family protein 76 9e-15
Os01g0595400 Protein of unknown function DUF538 family protein 69 2e-12
Os03g0692700 Similar to Pherophorin-S precursor 64 5e-11
>Os04g0443200 Protein of unknown function DUF538 family protein
Length = 165
Score = 266 bits (679), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 139/165 (84%), Positives = 139/165 (84%)
Query: 1 MVRMXXXXXXXXXXXXXXVVPTXXXXXXXXXXXXGPYDPPTVPELMDRFGLPRALLPVTA 60
MVRM VVPT GPYDPPTVPELMDRFGLPRALLPVTA
Sbjct: 1 MVRMAAAAASTFLLIAALVVPTASASASAAESAAGPYDPPTVPELMDRFGLPRALLPVTA 60
Query: 61 RRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAPGRATGLGGVRVRVLFAWVPV 120
RRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAPGRATGLGGVRVRVLFAWVPV
Sbjct: 61 RRYLLHDDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAPGRATGLGGVRVRVLFAWVPV 120
Query: 121 TAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRCIAGAATPATASDG 165
TAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRCIAGAATPATASDG
Sbjct: 121 TAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRCIAGAATPATASDG 165
>Os12g0198000 Protein of unknown function DUF538 family protein
Length = 167
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 40 PTVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGGC-VAEAGGYRVGYGVKLSGAV 98
PT E+++R+ PR +LPV Y L +DGSF+++ C A + V YG +++GA
Sbjct: 37 PTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVRYGARIAGAA 96
Query: 99 APGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
A GR T L GV V+VLF W+PV V+ +G ++ +GP+ SFP + F SP C
Sbjct: 97 ASGRLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
>Os11g0241832
Length = 184
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 40 PTVPELMDRFGLPRALLPVTARRYLLH-DDGSFQLFLDGGCVAEAGGYRVGYGVKLSGAV 98
PTV E++ ++G P +LP A+ Y L DGSFQ+ L G CV + GY++ Y + G V
Sbjct: 70 PTVYEMLGKYGFPPGILPAGAQGYTLDAGDGSFQVTLPGDCVVDVQGYKLRYRSNIYGNV 129
Query: 99 APGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
G GL GV V++ WV + VE GG+VT I KS PA GF++SP C
Sbjct: 130 RAGSIDGLDGVSVKIAIVWVGIHDVEADGGDVTFHASAISKSSPADGFQTSPSC 183
>Os11g0241200 Protein of unknown function DUF538 family protein
Length = 178
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 40 PTVPELMDRFGLPRALLPVTARRYLLHDDGSFQLFLDGG------C---VAEAGGYRVGY 90
PT E+++R+G PR +LP Y+L DGSF++ L G C V + G Y + Y
Sbjct: 39 PTAYEMVERYGFPRGILPEGVESYVLRPDGSFEVRLSGDGNGGGDCEFRVGDGGAYLLRY 98
Query: 91 GVKLSGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSP 150
G +++G G L GV V+VLFAW+ + V+ AG ++ +GP+ +FP A F P
Sbjct: 99 GRRVAGVAMEGSIRSLEGVSVKVLFAWLGIGRVDRAGDDLRFFVGPLSAAFPLANFADCP 158
Query: 151 RCIAG 155
RC G
Sbjct: 159 RCRCG 163
>Os11g0241700 Protein of unknown function DUF538 family protein
Length = 153
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 36 PYDPPTVPELMDRFGLPRALLPVTARRYLLHDDGS-FQLFLDGGCVAEAGG-YRVGYGVK 93
P PT +++ RFG P +LP + Y L DDGS F+++L G C A Y + Y +
Sbjct: 34 PSADPTAYDMLQRFGFPVGILPQGVQGYKLGDDGSSFEVYLAGDCEFRAAKKYVLHYSSR 93
Query: 94 LSGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPRC 152
++G +A G T L GV+V+ FAW ++ V+V G ++ + +G + A SP+C
Sbjct: 94 VAGQIAAGSITSLEGVKVKEAFAWFRISEVDVDGDQIKLHVGLYTATVAADQLAVSPQC 152
>Os05g0421100 Protein of unknown function DUF538 family protein
Length = 190
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 38 DPPTVPELMDRFGLPRALLPVTARRYLLH-DDGSFQLFL-DGGCVAEA-GGYRVGYGVKL 94
+ P+ E+++RFG PR +LP Y L DG F ++L G C E GGYR+ Y ++
Sbjct: 56 EEPSAYEMLERFGFPRGILPEGVTGYTLRPSDGEFAVYLGTGECEFEVDGGYRLTYQGRI 115
Query: 95 SGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTV-SLGPIKKSFPAAGFKSSPRC 152
+G VA G TGL GV VRV + V VA + V +GP+ ++FP GF+ SP+C
Sbjct: 116 TGRVAGGSITGLRGVTVRVFMMNWGIDRVVVADADHLVFYVGPLSQAFPVDGFEESPQC 174
>Os01g0595400 Protein of unknown function DUF538 family protein
Length = 160
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 35 GPYDPPTVPELMDRFGLPRALLPVTARRYLLHD-DGSFQLFLDGGC--VAEAGGYRVGYG 91
G D EL R G P LLP R Y L G F + L C V AG Y +
Sbjct: 35 GDGDVTAYDELRHR-GFPLGLLPANVRGYTLDSGSGDFAVDLASSCRIVLPAGSYLASFS 93
Query: 92 VKLSGAVAPGRATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSLGPIKKSFPAAGFKSSPR 151
+L+G + R +GL G+RVR F W +T + G E+ +G + FPA F +S
Sbjct: 94 DRLTGRLDDRRISGLSGIRVRAFFRWWSITGIRADGDELVFEVGSVSAKFPARHFNASLE 153
Query: 152 CIAGAAT 158
C A A +
Sbjct: 154 CPAKADS 160
>Os03g0692700 Similar to Pherophorin-S precursor
Length = 174
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 44 ELMDRFGLPRALLPVTARRYLLHDD-GSFQLFLDGGCVAEAGGYRVGYGVKLSGAVAPGR 102
+L+ +GLPR L+P T Y +D G F++ L C G + + + G +A G
Sbjct: 37 DLLPEYGLPRGLIPETIASYTFDNDTGDFEIRLTSTCYIWFGSHLAYFEDAIRGRIAYGT 96
Query: 103 ATGLGGVRVRVLFAWVPVTAVEVAGGEVTVSL--GPIKKSFPAAGFKSSPRCIAGA 156
TGL G++ + F WV +T + + TV G I ++ P + F P C AGA
Sbjct: 97 ITGLSGIQAQKFFVWVSITTIVAHPDQGTVEFRAGFISEALPESDFAEVPVCGAGA 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,742,929
Number of extensions: 260157
Number of successful extensions: 812
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 8
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)