BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0198000 Os12g0198000|AK106324
(167 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167 99 1e-21
AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168 96 9e-21
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 89 1e-18
AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150 82 1e-16
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 65 2e-11
AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176 63 8e-11
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 51 2e-07
AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162 47 6e-06
>AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167
Length = 166
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 30 SGNGTSTPTAYEMLERYDFPRGILPVGVEGYEL-REDGSFEVYFPRDCEFMLARTWLVXX 88
+ N PTAY +L+ Y+FP GILP GV Y+L + G F YF + C F L ++ +
Sbjct: 23 AANDDDIPTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDY 82
Query: 89 XXXXXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSP 148
+T L GV VKVLF+WL + EV R+GD L F +G S +F + +F SP
Sbjct: 83 KSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYESP 142
Query: 149 HCR-GYD 154
C G+D
Sbjct: 143 QCGCGFD 149
>AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168
Length = 167
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 34 TSTPTAYEMLERYDFPRGILPVGVEGYEL-REDGSFEVYFPRDCEFMLARTWLVXXXXXX 92
+ TPTAY +L+ Y+FP GILP GV Y+L G F YF C F L ++ +
Sbjct: 27 SDTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLNYKSTI 86
Query: 93 XXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
L L GV VKVLF+WL + EV R+GD + F +G S +F + +F SP C
Sbjct: 87 SGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLESPQC 144
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 37 PTAYEMLERYDFPRGILPVGVEGYELR-EDGSFEVYFPRDCEFMLARTWLVXXXXXXXXX 95
PTAY+ ++ Y+ P GILP GV YEL + G+F+VYF CEF + +++ +
Sbjct: 27 PTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTI-QSYQLKYKSTISGV 85
Query: 96 XXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHCR-GYD 154
+ +L+GV VKVLF W+ + EV G L F +G S SFP ++F SP C G+D
Sbjct: 86 ISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFEESPQCGCGFD 145
>AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150
Length = 149
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 30 SGNGTSTPTAYEMLERYDFPRGILPVGVEGYEL-REDGSFEVYFPRDCEFMLARTWLVXX 88
S +G + Y++LE Y PRGILP GV Y+L R G F+V F C+F + ++ V
Sbjct: 16 SVSGQKKRSVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSID-SYKVKY 74
Query: 89 XXXXXXXXXXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSP 148
+ L GV VKVLF W+ + EV R GD + F++G S F F SP
Sbjct: 75 KPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVDSP 134
Query: 149 HC 150
C
Sbjct: 135 KC 136
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 35 STPTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVXXXXXXXX 94
S T YE+L +Y P G+LP V + L +DG F V+ P CE + +LV
Sbjct: 32 SISTVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCE--IEFDYLVHYDKTISG 89
Query: 95 XXXXXXLTSLQGVYVKVLFVWLPVGEVDRS---GDTLSFYIGPVSTSFPLSDFA--HSPH 149
+T L+G+ VK F+WL V E+ D++ F +G ++ + F HS H
Sbjct: 90 RIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSCH 149
Query: 150 CRG 152
G
Sbjct: 150 DNG 152
>AT1G55265.1 | chr1:20617326-20617853 FORWARD LENGTH=176
Length = 175
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 40 YEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVXXXXXXXXXXXXX 99
+++L RY FP+G+LP V+ Y + +DG F V C ++ LV
Sbjct: 55 HDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSC-YVKFSDQLVFYGKNIAGKLSYG 113
Query: 100 XLTSLQGVYVKVLFVWLPVG--EVDRSGDTLSFYIGPVSTSFPLSDFAHSPHC 150
+ ++G+ K F+WLP+ E D S T+ F +G VS + P S F + P C
Sbjct: 114 SVKDVRGIQAKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPASMFENVPSC 166
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 39 AYEMLERYDFPRGILPVGVEGYELRE-DGSFEVYFPRDCEFMLA-RTWLVXXXXXXXXXX 96
A+ L + FP G+LP+ V+ Y L + G F ++ C+ L ++
Sbjct: 31 AHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGACKITLPPDNYIATYSNKVTGRI 90
Query: 97 XXXXLTSLQGVYVKVLFVWLPVGEVDRSGDTLSFYIGPVSTSFPLSDFAHSPHCRG 152
+ LQG+ V+ F + + SGD L F + ++ +P +F S C G
Sbjct: 91 SQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSKNFDESLDCEG 146
>AT5G54530.1 | chr5:22152781-22154201 FORWARD LENGTH=162
Length = 161
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 37 PTAYEMLERYDFPRGILPVGVEGYELREDGSFEVYFPRDCEFMLARTWLVXXXXXXXXXX 96
PT +++L P G+LP V+ Y L DG EV+ C V
Sbjct: 27 PTVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETN--VHFEAVVRGNL 84
Query: 97 XXXXLTSLQGVYVKVLFVWLPVGEV---DRSGDTLSFYIGPVSTSFPLSDFAHSPHCR 151
L ++G+ K LF+WL V ++ + + + F IG LS F P C+
Sbjct: 85 SYGSLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKCK 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,813,623
Number of extensions: 93615
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 8
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)