BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0362500 Os05g0362500|AK073380
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167 130 3e-31
AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168 125 1e-29
AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155 115 2e-26
AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150 96 1e-20
AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182 65 2e-11
AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152 54 3e-08
AT5G01610.1 | chr5:231075-231994 FORWARD LENGTH=171 54 7e-08
AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196 49 1e-06
AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170 47 5e-06
>AT1G02816.1 | chr1:621637-622137 FORWARD LENGTH=167
Length = 166
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 27 PTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSL 86
PTAY +L+SY+FPVGILPKGV SY L+ C FA++GSY L
Sbjct: 30 PTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKS---------CSFALQGSYQL 80
Query: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLE 146
Y+ I+G I+ +T L GV VKVLF WLNIVEV R GD LEFSVGI SA+F +D F E
Sbjct: 81 DYKSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYE 140
Query: 147 SPQ 149
SPQ
Sbjct: 141 SPQ 143
>AT4G02370.1 | chr4:1042458-1042961 FORWARD LENGTH=168
Length = 167
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 27 PTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSL 86
PTAY +L+SY+FPVGILPKGV +Y L+ C F + GSY L
Sbjct: 30 PTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDS---------CSFNLVGSYQL 80
Query: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNFLE 146
Y+ I+G I+ L L GV VKVLF WLNIVEV R GD +EFSVGI SA+F + FLE
Sbjct: 81 NYKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLE 140
Query: 147 SPQ 149
SPQ
Sbjct: 141 SPQ 143
>AT4G02360.1 | chr4:1041179-1041643 FORWARD LENGTH=155
Length = 154
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 77/125 (61%), Gaps = 10/125 (8%)
Query: 25 KKPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSY 84
+KPTAY+ ++ Y+ P GILPKGV Y L CEF I+ SY
Sbjct: 25 QKPTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDT---------CEFTIQ-SY 74
Query: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNF 144
L+Y+ I+G I+ GH+ +L+GV+VKVLFFW+NI EV+ G L+FSVGIASA F NF
Sbjct: 75 QLKYKSTISGVISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANF 134
Query: 145 LESPQ 149
ESPQ
Sbjct: 135 EESPQ 139
>AT1G02813.1 | chr1:620773-621222 FORWARD LENGTH=150
Length = 149
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 25 KKPTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSY 84
KK + Y+VLE+Y P GILP+GV Y L C+F+I+ SY
Sbjct: 21 KKRSVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTT---------CQFSID-SY 70
Query: 85 SLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVDNF 144
++Y+ I+G I G + L GV+VKVLFFW+NI EV+R GD +EF VG AS +F+ F
Sbjct: 71 KVKYKPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYF 130
Query: 145 LESPQ 149
++SP+
Sbjct: 131 VDSPK 135
>AT5G19860.1 | chr5:6714533-6715837 REVERSE LENGTH=182
Length = 181
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 28 TAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSLR 87
T YE+L Y P G+LP VT +TL CE IE Y +
Sbjct: 35 TVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNS----------CE--IEFDYLVH 82
Query: 88 YQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRR---GDRLEFSVGIASADFTVDNF 144
Y + I+GRI G +T+L+G+ VK F WL++ E+ D + F VG + +D F
Sbjct: 83 YDKTISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQF 142
>AT5G19590.1 | chr5:6611614-6612069 REVERSE LENGTH=152
Length = 151
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 25 KKPT-AYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIE-G 82
KKPT A+ L ++ FP+G+LP V Y L C+ +
Sbjct: 26 KKPTRAHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGA---------CKITLPPD 76
Query: 83 SYSLRYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASADFTVD 142
+Y Y +TGRI+ G + +L+G+ V+ F +I + GD L F V +A +
Sbjct: 77 NYIATYSNKVTGRISQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGITAKYPSK 136
Query: 143 NFLES 147
NF ES
Sbjct: 137 NFDES 141
>AT5G01610.1 | chr5:231075-231994 FORWARD LENGTH=171
Length = 170
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 31 EVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSLRYQR 90
E+L+ YD P+GI P T+Y + CE + S L++
Sbjct: 56 ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSI---------CEVGYKDSSVLKFTT 106
Query: 91 AITGRIATGHLTDLRGVAVKVLFFWLNIVEVTRRGDRLEFSVGIASA 137
+TG + G LTD+ G+ KV+ W+ + ++ ++ F+ G+ +
Sbjct: 107 TVTGHLEKGKLTDVEGIKTKVM-IWVKVTSISTDASKVYFTAGMKKS 152
>AT5G16380.1 | chr5:5359730-5360613 REVERSE LENGTH=196
Length = 195
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 27 PTAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSL 86
P+ Y+ L + P GI+PKGVT+++++ C+ E +
Sbjct: 29 PSFYDYLRESNLPAGIVPKGVTNFSID---------IKTGRFTVALPVPCDAKFENQFHF 79
Query: 87 RYQRAITGRIATGHLTDLRGVAVKVLFFWLNIVEV---TRRGDRLEFSVGIASADFTVDN 143
Y I+G ++ G + +L GV K LF W + + + + F VG+A ++
Sbjct: 80 DYN--ISGVLSDGRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSL 137
Query: 144 FLESPQ 149
F ESP+
Sbjct: 138 F-ESPR 142
>AT3G07470.1 | chr3:2387291-2388343 REVERSE LENGTH=170
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 28 TAYEVLESYDFPVGILPKGVTSYTLEXXXXXXXXXXXXXXXXXXXXXXCEFAIEGSYSLR 87
T YE+L + P GI PKGV +T + CE E +
Sbjct: 30 TIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQA---------CEAKYETE--IH 78
Query: 88 YQRAITGRIATGHLTDLRGVAVKVLFFWLNI----VEVTRRGDRLEFSVGIASADFTVDN 143
Y ITG I + ++DL G++ + LF W + V+V G + F VG+ +++
Sbjct: 79 YDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSG-LIYFDVGVVRKQYSLSL 137
Query: 144 FLESPQ 149
F E+P+
Sbjct: 138 F-ETPR 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,168,384
Number of extensions: 54702
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 9
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)