Os01g0913100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os01g0913100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.85 | 0.465 | 8.65 | 1.27 | 0.923 | -1.15 | 0.00794 | -0.899 | 0.741 | 4.31 | 0.4567 | 115 | -- | -- |
| 99.15 | 0.464 | 8.65 | 1.26 | 0.933 | -1.09 | 0.392 | -- | 0.74 | 4.18 | -3.556 | 120 | -- | -- |
| 97.85 | 0.461 | 8.65 | 1.27 | 0.919 | -1.14 | -- | -0.917 | 0.737 | 4.25 | 0.4903 | 120 | -- | -- |
| 99.55 | 0.465 | 8.65 | 1.26 | 0.938 | -1.09 | -- | -- | 0.74 | 4.19 | 0.5618 | 120 | -- | -- |
| 114.56 | 0.499 | 8.65 | 1.36 | -- | -1.78 | -- | -0.578 | 0.801 | -- | -8.749e-07 | 258 | -- | -- |
| 113.53 | 0.5 | 8.67 | 1.26 | 1.44 | -- | 0.413 | -- | 0.684 | 2.93 | -- | -- | -- | -- |
| 114.11 | 0.5 | 8.67 | 1.25 | 1.44 | -- | -- | -- | 0.681 | 2.94 | -- | -- | -- | -- |
| 115.68 | 0.501 | 8.64 | 1.33 | -- | -1.79 | -- | -- | 0.817 | -- | -1.133 | 261 | -- | -- |
| 141.1 | 0.553 | 8.68 | -- | 0.987 | -1.03 | -- | -- | 0.596 | 4 | 1.642 | 115 | -- | -- |
| 233.76 | 0.714 | 8.66 | 1.31 | -- | -- | -- | -- | 0.718 | -- | -- | -- | -- | -- |
| 155.04 | 0.582 | 8.7 | -- | 1.47 | -- | -- | -- | 0.542 | 2.95 | -- | -- | -- | -- |
| 162.14 | 0.593 | 8.68 | -- | -- | -1.78 | -- | -- | 0.668 | -- | -10.38 | 257 | -- | -- |
| 278.88 | 0.779 | 8.7 | -- | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.82 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 5 | 94.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 15 | 94.69 | radiation | 20 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 19 | 94.80 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 18 |
| 26 | 94.94 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 18 |
| 27 | 94.98 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 29 | 94.99 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 34 | 95.22 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 9 |
| 43 | 95.45 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 18 |
| 57 | 95.73 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 72 | 96.15 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 79 | 96.24 | radiation | 20 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 81 | 96.28 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 18 |
| 83 | 96.30 | radiation | 40 | 30 | < th | dose independent | rect. | 5 | 18 |
| 84 | 96.31 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 16 |
| 90 | 96.40 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 16 |
| 93 | 96.41 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 16 |
| 95 | 96.42 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 18 |
| 124 | 96.64 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 127 | 96.66 | radiation | 20 | 270 | < th | dose dependent | sin | 3 | NA |
| 129 | 96.67 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 10 |
| 168 | 96.98 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 19 |
| 169 | 97.00 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 18 |
| 174 | 97.04 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 182 | 97.07 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 206 | 97.22 | humidity | 70 | 10 | > th | dose independent | rect. | 5 | 16 |
| 249 | 97.46 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 271 | 97.56 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 19 |
| 296 | 97.65 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 352 | 97.85 | atmosphere | 995 | 270 | > th | dose independent | rect. | 3 | 17 |
| 394 | 98.05 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 22 |
| 395 | 98.05 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 409 | 98.06 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 437 | 98.18 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 476 | 98.35 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 504 | 98.43 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 531 | 98.49 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 536 | 98.52 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 567 | 98.60 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 628 | 98.62 | radiation | 20 | 90 | < th | dose independent | rect. | 18 | 17 |
| 657 | 98.64 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 661 | 98.65 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 676 | 98.68 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 692 | 98.70 | radiation | 10 | 270 | < th | dose independent | sin | 2 | NA |
| 712 | 98.74 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 722 | 98.77 | radiation | 40 | 90 | < th | dose dependent | sin | 0 | NA |
| 740 | 98.81 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 756 | 98.84 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 804 | 98.91 | radiation | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 849 | 99.02 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 871 | 99.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 912 | 99.13 | humidity | 70 | 270 | > th | dose independent | rect. | 2 | 9 |
| 928 | 99.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |