BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0530000 Os12g0530000|AK121752
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0530856 185 1e-47
Os12g0530000 Similar to Histone H2A 185 1e-47
Os03g0721900 Similar to Histone H2A 158 1e-39
AK064299 156 4e-39
Os07g0545400 Similar to Histone H2A 146 4e-36
AK058540 146 4e-36
Os12g0438000 Similar to Histone H2A 146 5e-36
Os05g0461400 Similar to Histone H2A.2.1 125 9e-30
Os05g0113900 Similar to Histone H2A 125 1e-29
Os03g0279200 Similar to Histone H2A 120 3e-28
Os01g0502700 Similar to Histone H2A 120 3e-28
Os03g0162200 Similar to Histone H2A 81 3e-16
Os03g0743400 Similar to H2A protein 80 5e-16
Os10g0418000 Similar to Histone H2A 78 2e-15
>Os12g0530856
Length = 138
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 94/112 (83%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIARYLKAGKYAERVGAGAP GNAARDNKKNRIVPRH
Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRH 86
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF
Sbjct: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
>Os12g0530000 Similar to Histone H2A
Length = 138
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 94/112 (83%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIARYLKAGKYAERVGAGAP GNAARDNKKNRIVPRH
Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRH 86
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF
Sbjct: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
>Os03g0721900 Similar to Histone H2A
Length = 137
Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIARYLKAGKYAERVGAGAP GNAARDNKKNRIVPRH
Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRH 86
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELSRLLG VTIAAGGVLPNI Q LLPKK G K DIGSASQEF
Sbjct: 87 IQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
>AK064299
Length = 149
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIARYLKAGKYAERVGAGAP GNAARDNKKNRIVPRH
Sbjct: 39 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRH 98
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELSRLLG VTIAAGGVLPNI Q LLPKK G K DIGSASQEF
Sbjct: 99 IQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 149
>Os07g0545400 Similar to Histone H2A
Length = 135
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 78/103 (75%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKA 129
IQLAVRNDEEL++LLG TIA+GGV+PNIHQ LLPKK G KA
Sbjct: 85 IQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKA 127
>AK058540
Length = 135
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 78/103 (75%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKA 129
IQLAVRNDEEL++LLG TIA+GGV+PNIHQ LLPKK G KA
Sbjct: 85 IQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKA 127
>Os12g0438000 Similar to Histone H2A
Length = 135
Score = 146 bits (368), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 78/103 (75%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKA 129
IQLAVRNDEEL++LLG TIA+GGV+PNIHQ LLPKK G KA
Sbjct: 85 IQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKA 127
>Os05g0461400 Similar to Histone H2A.2.1
Length = 163
Score = 125 bits (314), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 71/103 (68%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRI RYLK G+Y++R+G GAP GNAARDNKKNRI+PRH
Sbjct: 35 LQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRH 94
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKA 129
+ LA+RNDEEL +LL VTIA GGVLPNI+ LLPKK G A
Sbjct: 95 VLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAA 137
>Os05g0113900 Similar to Histone H2A
Length = 156
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRI RYLK G+YA+RVG GAP GNAARDNKKNRI+PRH
Sbjct: 34 LQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRH 93
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKAD 130
+ LA+RNDEEL +LL VTIA GGVLPNI+ LLPKK +KAD
Sbjct: 94 VLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTA-EKAD 136
>Os03g0279200 Similar to Histone H2A
Length = 159
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 67/95 (70%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRI RYLK G+YA+R+G GAP GNAARDNKKNRI+PRH
Sbjct: 37 LQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRH 96
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 97 VLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os01g0502700 Similar to Histone H2A
Length = 159
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 67/95 (70%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRI RYLK G+YA+R+G GAP GNAARDNKKNRI+PRH
Sbjct: 37 LQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRH 96
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 97 VLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os03g0162200 Similar to Histone H2A
Length = 138
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
LQFPVGRI R LK+ A RVGA A GNA++D K RI PR
Sbjct: 39 LQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 98
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 99 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
>Os03g0743400 Similar to H2A protein
Length = 137
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
LQFPVGRI R LK A RVGA A GNA++D K RI PR
Sbjct: 38 LQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 97
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 98 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 133
>Os10g0418000 Similar to Histone H2A
Length = 139
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
+QFPVGRI R LK A RVGA A GNA++D K RI PR
Sbjct: 40 IQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 99
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 100 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,280,812
Number of extensions: 105553
Number of successful extensions: 236
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 14
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)