Os05g0461400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2A.2.1.
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Os05g0461400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2A.2.1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.97 | 0.282 | 15.2 | -0.926 | 0.579 | 0.622 | 0.228 | -2.42 | -0.203 | 1.9 | 26.2 | 5214 | -- | -- |
| 38.74 | 0.29 | 15.2 | -0.512 | 0.59 | 0.612 | 0.28 | -- | -0.18 | 1.62 | 21.5 | 8593 | -- | -- |
| 36.1 | 0.28 | 15.2 | -0.928 | 0.606 | 0.613 | -- | -2.4 | -0.194 | 1.85 | 26.3 | 4790 | -- | -- |
| 38.64 | 0.29 | 15.2 | -0.472 | 0.596 | 0.554 | -- | -- | -0.132 | 1.6 | 21.42 | 7459 | -- | -- |
| 54.99 | 0.345 | 15.2 | -0.907 | -- | 0.666 | -- | -2.25 | -0.191 | -- | 25.8 | 3819 | -- | -- |
| 45.51 | 0.316 | 15.1 | -0.0762 | 0.609 | -- | 0.186 | -- | 0.0708 | 1.65 | -- | -- | -- | -- |
| 45.65 | 0.316 | 15.1 | -0.0822 | 0.609 | -- | -- | -- | 0.0698 | 1.62 | -- | -- | -- | -- |
| 57.55 | 0.353 | 15.2 | -0.317 | -- | 0.581 | -- | -- | -0.0954 | -- | 24.05 | 3900 | -- | -- |
| 40.34 | 0.296 | 15.2 | -- | 0.6 | 0.385 | -- | -- | -0.0661 | 1.49 | 22.9 | 3061 | -- | -- |
| 68.28 | 0.386 | 15.1 | -0.0576 | -- | -- | -- | -- | 0.0832 | -- | -- | -- | -- | -- |
| 45.82 | 0.317 | 15.1 | -- | 0.607 | -- | -- | -- | 0.0789 | 1.62 | -- | -- | -- | -- |
| 59.08 | 0.358 | 15.2 | -- | -- | 0.452 | -- | -- | -0.0476 | -- | 24.1 | 2468 | -- | -- |
| 68.37 | 0.386 | 15.1 | -- | -- | -- | -- | -- | 0.0896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 33.96 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 3 | 34.28 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 4 | 34.31 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 6 | 34.35 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 11 | 34.44 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 14 | 34.46 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 33 | 34.56 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 37 | 34.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 57 | 34.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 85 | 34.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 103 | 34.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 109 | 34.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 118 | 34.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 122 | 34.87 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 146 | 34.91 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 148 | 34.92 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 170 | 34.94 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 177 | 34.96 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 188 | 35.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 195 | 35.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 217 | 35.04 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 226 | 35.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 233 | 35.07 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 250 | 35.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 280 | 35.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 323 | 35.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 329 | 35.18 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 367 | 35.21 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 390 | 35.23 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 447 | 35.25 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 495 | 35.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 533 | 35.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 536 | 35.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 560 | 35.29 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 588 | 35.31 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 590 | 35.31 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 594 | 35.31 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 623 | 35.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 639 | 35.33 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 664 | 35.34 | radiation | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 676 | 35.35 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 697 | 35.36 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 699 | 35.36 | humidity | 90 | 43200 | > th | dose dependent | sin | 3 | NA |
| 707 | 35.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 715 | 35.37 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 768 | 35.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 820 | 35.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 872 | 35.41 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 885 | 35.42 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 895 | 35.43 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 913 | 35.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 966 | 35.45 | radiation | 30 | 43200 | < th | dose dependent | sin | 8 | NA |
| 998 | 35.46 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 2 |