BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0461400 Os05g0461400|AK067406
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59870.1 | chr5:24115605-24116144 REVERSE LENGTH=151 144 2e-35
AT5G02560.2 | chr5:575437-576456 FORWARD LENGTH=178 142 5e-35
AT5G27670.1 | chr5:9792807-9793365 REVERSE LENGTH=151 140 4e-34
AT1G08880.1 | chr1:2847144-2847676 REVERSE LENGTH=143 129 6e-31
AT1G54690.1 | chr1:20414607-20415206 REVERSE LENGTH=143 129 8e-31
AT4G27230.1 | chr4:13637515-13638325 REVERSE LENGTH=132 128 2e-30
AT3G20670.1 | chr3:7229472-7229963 FORWARD LENGTH=133 127 2e-30
AT1G51060.1 | chr1:18926948-18927443 FORWARD LENGTH=133 127 2e-30
AT5G54640.1 | chr5:22196540-22197279 FORWARD LENGTH=131 127 2e-30
AT2G38810.1 | chr2:16219444-16220679 REVERSE LENGTH=137 79 1e-15
AT3G54560.1 | chr3:20196532-20197466 FORWARD LENGTH=137 77 3e-15
AT1G52740.1 | chr1:19645409-19646221 FORWARD LENGTH=135 76 9e-15
AT4G13570.2 | chr4:7884582-7885664 FORWARD LENGTH=125 48 2e-06
>AT5G59870.1 | chr5:24115605-24116144 REVERSE LENGTH=151
Length = 150
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 81/102 (79%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
S+S+KAGLQFPVGRI R+LK+GRY+QR+G GAP GNAARDNKK
Sbjct: 26 SKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKK 85
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
+RIIPRH+LLAIRNDEELGKLL+GVTIAHGGVLPNIN VLLP
Sbjct: 86 SRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLP 127
>AT5G02560.2 | chr5:575437-576456 FORWARD LENGTH=178
Length = 177
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 82/126 (65%), Gaps = 24/126 (19%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXX--------------------- 66
SRSVK+GLQFPVGRIGRYLK+GRYS+R+GTGAP
Sbjct: 26 SRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAENSCGFCSVASLTIY 85
Query: 67 ---XXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNI 123
GNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIAHGGVLPNI
Sbjct: 86 RCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNI 145
Query: 124 NPVLLP 129
NP+LLP
Sbjct: 146 NPILLP 151
>AT5G27670.1 | chr5:9792807-9793365 REVERSE LENGTH=151
Length = 150
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 77/102 (75%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
S+SVKAGLQFPVGRI RYLK+GRY+ R G+GAP GNAARDNKK
Sbjct: 27 SKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKK 86
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRI PRH+ LAIRNDEELG+LL GVTIA GGVLPNINPVLLP
Sbjct: 87 NRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLP 128
>AT1G08880.1 | chr1:2847144-2847676 REVERSE LENGTH=143
Length = 142
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 24 SRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 83
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP
Sbjct: 84 TRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP 125
>AT1G54690.1 | chr1:20414607-20415206 REVERSE LENGTH=143
Length = 142
Score = 129 bits (324), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 24 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 83
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP
Sbjct: 84 TRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP 125
>AT4G27230.1 | chr4:13637515-13638325 REVERSE LENGTH=132
Length = 131
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 74/102 (72%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGV+PNI+ +LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLP 119
>AT3G20670.1 | chr3:7229472-7229963 FORWARD LENGTH=133
Length = 132
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y+ R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGV+PNI+ +LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLP 119
>AT1G51060.1 | chr1:18926948-18927443 FORWARD LENGTH=133
Length = 132
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
+RS KAGLQFPVGRI R+LK+G+Y++R+G GAP GNAARDNKK
Sbjct: 18 TRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGV+PNI+ +LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLP 119
>AT5G54640.1 | chr5:22196540-22197279 FORWARD LENGTH=131
Length = 130
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 74/102 (72%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL VTIA+GGV+PNI+ +LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLP 119
>AT2G38810.1 | chr2:16219444-16220679 REVERSE LENGTH=137
Length = 136
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQ--RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 85
SRS +AG+QFPVGRI R LKQ R S R+G A GNA++D
Sbjct: 30 SRSSRAGIQFPVGRIHRQLKQ-RVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88
Query: 86 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 89 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLV 130
>AT3G54560.1 | chr3:20196532-20197466 FORWARD LENGTH=137
Length = 136
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQ--RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 85
SRS +AG+QFPVGRI R LK R S R+G A GNA++D
Sbjct: 30 SRSARAGIQFPVGRIHRQLKT-RVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDL 88
Query: 86 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 89 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 130
>AT1G52740.1 | chr1:19645409-19646221 FORWARD LENGTH=135
Length = 134
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 86
+RS +AGLQFPVGR+ R LK + R+G A GNA++D K
Sbjct: 28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 87
Query: 87 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 88 VKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 128
>AT4G13570.2 | chr4:7884582-7885664 FORWARD LENGTH=125
Length = 124
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 35 LQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXX--XXXXXXXXGNAARDNKKNRIIP 92
++F V RI + LK R S GA N ++D K RI P
Sbjct: 35 IRFQVARIHKQLK-NRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITP 93
Query: 93 RHVLLAIRNDEELGKLLAGVTIAHGGVLPNIN 124
RH+ LAIR DEEL L+ G TI G V+P+I+
Sbjct: 94 RHLQLAIRGDEELDTLIKG-TIIGGSVIPHIH 124
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,756,904
Number of extensions: 49379
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 14
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)