BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0461400 Os05g0461400|AK067406
(163 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0461400 Similar to Histone H2A.2.1 165 2e-41
Os03g0279200 Similar to Histone H2A 159 6e-40
Os01g0502700 Similar to Histone H2A 159 6e-40
Os05g0113900 Similar to Histone H2A 159 7e-40
Os03g0721900 Similar to Histone H2A 132 8e-32
Os12g0530856 131 3e-31
Os12g0530000 Similar to Histone H2A 131 3e-31
Os12g0438000 Similar to Histone H2A 127 3e-30
Os07g0545400 Similar to Histone H2A 127 4e-30
AK058540 127 4e-30
AK064299 127 4e-30
Os03g0743400 Similar to H2A protein 80 8e-16
Os10g0418000 Similar to Histone H2A 79 2e-15
Os03g0162200 Similar to Histone H2A 78 3e-15
>Os05g0461400 Similar to Histone H2A.2.1
Length = 163
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 84/102 (82%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP GNAARDNKK
Sbjct: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKK 87
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
>Os03g0279200 Similar to Histone H2A
Length = 159
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/102 (80%), Positives = 84/102 (82%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRSVKAGLQFPVGRIGRYLK+GRY+QRIGTGAP GNAARDNKK
Sbjct: 30 SRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKK 89
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 90 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os01g0502700 Similar to Histone H2A
Length = 159
Score = 159 bits (403), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/102 (80%), Positives = 84/102 (82%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRSVKAGLQFPVGRIGRYLK+GRY+QRIGTGAP GNAARDNKK
Sbjct: 30 SRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKK 89
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 90 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os05g0113900 Similar to Histone H2A
Length = 156
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 84/102 (82%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRSVKAGLQFPVGRIGRYLK+GRY+QR+GTGAP GNAARDNKK
Sbjct: 27 SRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKK 86
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 87 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 128
>Os03g0721900 Similar to Histone H2A
Length = 137
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI RYLK G+Y++R+G GAP GNAARDNKK
Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 79
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI VLLP
Sbjct: 80 NRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLP 121
>Os12g0530856
Length = 138
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI RYLK G+Y++R+G GAP GNAARDNKK
Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 79
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 80 NRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
>Os12g0530000 Similar to Histone H2A
Length = 138
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 73/102 (71%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI RYLK G+Y++R+G GAP GNAARDNKK
Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 79
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
NRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 80 NRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
>Os12g0438000 Similar to Histone H2A
Length = 135
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>Os07g0545400 Similar to Histone H2A
Length = 135
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>AK058540
Length = 135
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKK 87
SRS KAGLQFPVGRI R+LK G+Y++R+G GAP GNAARDNKK
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 77
Query: 88 NRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 78 TRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>AK064299
Length = 149
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 71/100 (71%)
Query: 30 SVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNR 89
+ KAGLQFPVGRI RYLK G+Y++R+G GAP GNAARDNKKNR
Sbjct: 34 TTKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNR 93
Query: 90 IIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
I+PRH+ LA+RNDEEL +LL VTIA GGVLPNI VLLP
Sbjct: 94 IVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLP 133
>Os03g0743400 Similar to H2A protein
Length = 137
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQ-GRYSQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 86
SRS +AGLQFPVGRI R LKQ + + R+G A GNA++D K
Sbjct: 31 SRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 90
Query: 87 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 91 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 131
>Os10g0418000 Similar to Histone H2A
Length = 139
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQ--RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 85
SRS +AG+QFPVGRI R LK GR S R+G A GNA++D
Sbjct: 33 SRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
Query: 86 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 92 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
>Os03g0162200 Similar to Histone H2A
Length = 138
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 28 SRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 86
SRS +AGLQFPVGRI R LK + R+G A GNA++D K
Sbjct: 32 SRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 91
Query: 87 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 128
RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 92 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,822,323
Number of extensions: 81705
Number of successful extensions: 152
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 14
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)