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Os03g0743400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to H2A protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.14 (0.0231) R2 : 0.251
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.673 (0.0591) R2dC : 0.215 R2C : 0.205
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.225 (0.0486) R2dN8 : 0.0454 R2N8 : 0.0362
σ : 0.436
deviance : 86.72
__
_____
C
peak time of C : 19.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.82 0.398 9.13 0.0244 0.639 -0.57 0.525 0.645 -0.222 17.4 3 1 -- --
73.44 0.399 9.13 -0.0508 0.684 -0.593 0.718 -- -0.272 16.7 16.1 4 -- --
73.35 0.399 9.14 -0.0498 0.626 -0.541 -- 0.547 -0.267 17.1 15.93 2 -- --
74.55 0.402 9.14 0.00959 0.647 -0.562 -- -- -0.25 17.1 17.38 6 -- --
93.15 0.45 9.13 -0.0504 -- -0.446 -- 0.582 -0.263 -- 16.56 6 -- --
86.66 0.436 9.15 -0.0217 0.673 -- 0.127 -- -0.228 19.9 -- -- -- --
86.71 0.436 9.15 -0.0254 0.673 -- -- -- -0.228 19.9 -- -- -- --
95.05 0.454 9.13 -0.031 -- -0.431 -- -- -0.256 -- 16.57 6 -- --
74.55 0.402 9.14 -- 0.647 -0.561 -- -- -0.251 17.1 17.36 6 -- --
111.37 0.493 9.13 -0.0325 -- -- -- -- -0.236 -- -- -- -- --
86.72 0.436 9.14 -- 0.673 -- -- -- -0.225 19.9 -- -- -- --
95.05 0.454 9.13 -- -- -0.435 -- -- -0.255 -- 16.57 6 -- --
111.4 0.493 9.13 -- -- -- -- -- -0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.14 temperature 15.0 90 > th dose dependent rect. 20 9
5 61.38 temperature 15.0 10 > th dose dependent rect. 20 10
26 64.32 temperature 20.0 90 > th dose independent rect. 20 9
38 65.43 temperature 20.0 90 > th dose independent rect. 9 20
42 65.51 temperature 20.0 10 > th dose independent rect. 20 10
53 65.85 temperature 10.0 90 > th dose dependent rect. 9 20
56 66.26 radiation 30.0 10 < th dose dependent rect. 6 14
60 66.44 radiation 20.0 10 < th dose independent rect. 6 14
64 66.92 temperature 10.0 10 > th dose dependent rect. 9 21
82 67.63 temperature 20.0 10 > th dose independent rect. 9 21
106 68.21 temperature 20.0 270 > th dose independent rect. 8 18
119 68.50 radiation 10.0 90 > th dose independent rect. 9 7
123 68.62 radiation 20.0 10 < th dose dependent rect. 6 18
127 68.67 radiation 10.0 90 > th dose independent rect. 9 9
148 68.77 radiation 20.0 90 < th dose independent rect. 5 15
156 68.96 atmosphere 1010.0 90 < th dose independent rect. 20 9
165 69.16 radiation 20.0 10 < th dose independent rect. 6 18
168 69.22 wind 1.0 90 > th dose independent rect. 5 15
171 69.28 radiation 20.0 10 < th dose dependent sin 20 NA
190 69.56 humidity 90.0 90 < th dose independent rect. 9 7
196 69.68 temperature 30.0 90 < th dose dependent rect. 15 18
201 69.76 radiation 1.0 270 > th dose independent rect. 7 8
202 69.76 temperature 20.0 90 > th dose independent rect. 20 19
213 69.92 radiation 20.0 90 < th dose independent rect. 13 20
214 69.93 radiation 10.0 10 > th dose independent rect. 9 23
216 69.96 humidity 80.0 10 < th dose independent rect. 9 7
217 69.97 humidity 70.0 90 > th dose independent rect. 19 10
220 69.98 radiation 20.0 90 < th dose independent rect. 15 18
221 69.98 humidity 50.0 10 > th dose dependent rect. 6 14
235 70.11 radiation 20.0 90 < th dose independent rect. 5 4
238 70.11 humidity 50.0 90 > th dose dependent rect. 5 14
240 70.12 wind 1.0 90 > th dose independent rect. 5 4
246 70.18 temperature 15.0 270 > th dose independent rect. 7 8
269 70.32 radiation 40.0 90 < th dose dependent rect. 5 4
286 70.34 humidity 90.0 10 < th dose dependent rect. 9 7
292 70.40 radiation 10.0 90 > th dose independent sin 23 NA
293 70.41 radiation 1.0 90 < th dose independent rect. 20 9
297 70.43 temperature 30.0 90 < th dose independent rect. 20 9
298 70.43 humidity 50.0 90 > th dose independent rect. 20 9
301 70.43 atmosphere 995.0 90 > th dose independent rect. 20 9
305 70.43 temperature 10.0 90 > th dose independent rect. 5 15
306 70.43 atmosphere 1015.0 90 < th dose independent rect. 5 15
308 70.43 radiation 10.0 90 < th dose dependent rect. 20 9
313 70.45 humidity 70.0 90 > th dose independent rect. 5 4
314 70.45 precipitation 0.1 90 < th dose independent rect. 5 15
317 70.45 precipitation 0.1 90 < th dose dependent rect. 5 15
319 70.48 wind 9.0 90 < th dose independent rect. 20 9
324 70.52 radiation 40.0 90 < th dose dependent rect. 5 6
328 70.56 atmosphere 995.0 90 > th dose dependent rect. 5 4
332 70.57 radiation 20.0 10 < th dose independent rect. 5 23
337 70.60 radiation 10.0 270 < th dose independent rect. 5 2
344 70.62 radiation 40.0 90 < th dose dependent rect. 15 18
345 70.63 temperature 20.0 30 > th dose independent rect. 20 21
352 70.65 radiation 20.0 10 < th dose dependent rect. 20 10
357 70.67 temperature 10.0 1440 > th dose independent rect. 21 9
360 70.67 temperature 30.0 1440 < th dose independent rect. 21 9
364 70.67 humidity 50.0 1440 > th dose independent rect. 21 9
370 70.67 atmosphere 995.0 1440 > th dose independent rect. 21 9
371 70.67 radiation 20.0 1440 < th dose independent rect. 21 9
380 70.67 temperature 10.0 1440 > th dose independent rect. 6 15
386 70.69 radiation 20.0 10 < th dose independent rect. 6 4
395 70.74 radiation 10.0 10 < th dose independent rect. 20 10
396 70.74 radiation 10.0 270 < th dose dependent rect. 5 1
406 70.80 humidity 50.0 90 > th dose independent rect. 16 17
410 70.82 radiation 40.0 90 < th dose dependent rect. 13 22
411 70.83 radiation 40.0 90 < th dose dependent rect. 13 20
412 70.84 temperature 15.0 90 > th dose independent rect. 9 7
417 70.86 radiation 20.0 10 < th dose independent rect. 13 21
418 70.86 radiation 20.0 10 < th dose independent rect. 1 23
426 70.89 precipitation 0.1 90 < th dose independent rect. 20 9
427 70.89 precipitation 0.1 90 < th dose dependent rect. 20 9
438 70.96 wind 9.0 90 < th dose independent rect. 9 20
452 71.02 atmosphere 1000.0 90 > th dose independent rect. 5 4
477 71.09 atmosphere 1015.0 90 < th dose independent rect. 9 20
482 71.14 wind 1.0 270 > th dose independent rect. 5 1
484 71.14 humidity 50.0 90 > th dose dependent rect. 5 4
500 71.23 wind 1.0 270 > th dose independent rect. 14 17
506 71.25 radiation 20.0 90 < th dose independent rect. 5 19
513 71.27 radiation 30.0 10 < th dose dependent rect. 6 4
518 71.29 temperature 15.0 30 > th dose dependent rect. 20 21
524 71.31 precipitation 0.1 270 < th dose independent rect. 7 8
529 71.31 precipitation 0.1 270 < th dose dependent rect. 7 8
541 71.37 radiation 20.0 10 < th dose independent rect. 5 21
543 71.38 wind 9.0 270 < th dose independent rect. 7 8
551 71.39 wind 9.0 90 < th dose independent rect. 5 15
555 71.41 wind 9.0 90 < th dose independent rect. 5 4
556 71.41 temperature 10.0 90 > th dose independent rect. 5 4
560 71.41 atmosphere 1015.0 90 < th dose independent rect. 5 4
570 71.44 precipitation 0.1 90 < th dose independent rect. 5 4
573 71.44 precipitation 0.1 90 < th dose dependent rect. 5 4
578 71.46 radiation 10.0 10 > th dose independent sin 21 NA
579 71.46 radiation 20.0 10 > th dose independent sin 23 NA
580 71.46 radiation 10.0 270 > th dose independent rect. 9 4
603 71.49 precipitation 0.1 270 < th dose independent rect. 15 16
605 71.49 precipitation 0.1 270 < th dose dependent rect. 15 16
614 71.52 humidity 70.0 10 > th dose independent rect. 6 14
615 71.52 atmosphere 995.0 90 > th dose independent rect. 5 15
625 71.55 temperature 10.0 90 > th dose dependent rect. 5 4
628 71.58 temperature 10.0 270 > th dose dependent rect. 20 17
631 71.59 atmosphere 1015.0 270 < th dose independent rect. 7 8
632 71.59 temperature 10.0 270 > th dose independent rect. 15 16
641 71.63 temperature 15.0 90 > th dose dependent rect. 20 19
651 71.64 radiation 20.0 10 < th dose independent rect. 16 18
655 71.64 radiation 40.0 270 < th dose independent rect. 12 21
659 71.65 temperature 30.0 90 < th dose independent rect. 5 4
663 71.66 atmosphere 995.0 270 > th dose dependent rect. 5 1
674 71.69 humidity 80.0 90 < th dose independent rect. 7 9
689 71.72 humidity 60.0 90 > th dose dependent rect. 5 6
698 71.74 temperature 15.0 270 > th dose dependent rect. 5 2
724 71.81 atmosphere 995.0 270 > th dose independent rect. 7 8
727 71.82 radiation 20.0 10 > th dose independent no NA NA
728 71.82 radiation 20.0 10 > th dose independent rect. 7 10
863 71.85 wind 9.0 90 < th dose independent rect. 9 7
866 71.86 wind 9.0 270 < th dose independent rect. 15 16
878 71.88 radiation 20.0 10 < th dose independent rect. 21 23
896 71.92 precipitation 0.1 90 < th dose independent rect. 9 20
900 71.92 precipitation 0.1 90 < th dose dependent rect. 9 20
901 71.93 atmosphere 1015.0 10 < th dose independent rect. 20 10
931 72.00 atmosphere 995.0 90 > th dose independent rect. 16 17
946 72.03 humidity 90.0 10 < th dose dependent rect. 7 9
969 72.08 radiation 20.0 10 < th dose independent no NA NA
970 72.08 precipitation 0.1 90 < th dose independent rect. 9 7
973 72.08 precipitation 0.1 90 < th dose dependent rect. 9 7
981 72.10 radiation 20.0 10 < th dose independent rect. 15 23
990 72.12 temperature 30.0 10 < th dose independent rect. 20 10
991 72.12 humidity 50.0 10 > th dose independent rect. 20 10
994 72.12 atmosphere 995.0 10 > th dose independent rect. 20 10
998 72.12 temperature 10.0 10 > th dose independent rect. 6 14
1000 72.12 atmosphere 1015.0 10 < th dose independent rect. 6 14