Os03g0279200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2A.
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Os03g0279200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.67 | 0.727 | 14 | 0.245 | 2.39 | 3.61 | -0.217 | -2.48 | -0.224 | 11.3 | 0.76 | 685 | 9.2 | -- |
| 243.65 | 0.727 | 14 | 0.338 | 2.4 | 3.85 | 1.35 | -- | -0.174 | 11.3 | 0.5885 | 684 | 8.92 | -- |
| 239.15 | 0.72 | 14 | 0.237 | 2.3 | 3.58 | -- | -2.31 | -0.233 | 11.4 | 0.7201 | 683 | 8.74 | -- |
| 249.67 | 0.736 | 14 | 0.341 | 2.05 | 3.75 | -- | -- | -0.175 | 11.7 | 0.52 | 683 | 8.25 | -- |
| 352.98 | 0.875 | 14 | -0.279 | -- | 2.89 | -- | -2.38 | -0.459 | -- | 0.4655 | 1947 | 9.91 | -- |
| 328.05 | 0.849 | 14 | 0.673 | 1.89 | -- | -1.01 | -- | 0.0115 | 17.9 | -- | -- | -- | -- |
| 330.5 | 0.851 | 14 | 0.681 | 1.88 | -- | -- | -- | 0.00784 | 17.8 | -- | -- | -- | -- |
| 315.61 | 0.827 | 14.1 | 0.906 | -- | 3.14 | -- | -- | -0.249 | -- | 0.26 | 2038 | 14.8 | -- |
| 252.75 | 0.74 | 14 | -- | 2 | 3.73 | -- | -- | -0.225 | 11.8 | 0.4905 | 684 | 8.12 | -- |
| 514.08 | 1.06 | 14 | 0.624 | -- | -- | -- | -- | -0.0361 | -- | -- | -- | -- | -- |
| 342.72 | 0.866 | 14 | -- | 1.87 | -- | -- | -- | -0.068 | 17.9 | -- | -- | -- | -- |
| 297.47 | 0.803 | 14.1 | -- | -- | 3.03 | -- | -- | -0.295 | -- | 0.1702 | 2092 | 16.2 | -- |
| 524.34 | 1.07 | 14 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 242.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 6 |
| 4 | 243.48 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 7 |
| 25 | 246.83 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 53 | 249.64 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 65 | 251.39 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 87 | 252.80 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 15 |
| 105 | 254.17 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 126 | 255.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 145 | 256.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 199 | 259.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 213 | 261.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 356 | 268.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 361 | 268.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 411 | 271.22 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 2 |
| 456 | 272.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 458 | 272.95 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 461 | 272.99 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 491 | 273.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 504 | 274.28 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 530 | 274.98 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 534 | 275.19 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 556 | 275.54 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 22 |
| 564 | 275.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 581 | 276.36 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 7 |
| 609 | 277.16 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 4 |
| 614 | 277.28 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 6 |
| 633 | 277.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 653 | 277.64 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 4 |
| 714 | 278.51 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 727 | 278.72 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 12 |
| 730 | 278.75 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 10 |
| 731 | 278.77 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 759 | 279.12 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 16 |
| 772 | 279.36 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 10 |
| 798 | 279.67 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 822 | 279.91 | radiation | 10 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 843 | 280.13 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 856 | 280.29 | radiation | 1 | 90 | < th | dose independent | rect. | 4 | 14 |
| 890 | 280.75 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 19 |
| 923 | 281.05 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 933 | 281.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 967 | 281.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 975 | 281.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 977 | 281.54 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 18 |