BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0279200 Os03g0279200|AK121750
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0461400 Similar to Histone H2A.2.1 163 5e-41
Os03g0279200 Similar to Histone H2A 163 6e-41
Os01g0502700 Similar to Histone H2A 163 6e-41
Os05g0113900 Similar to Histone H2A 162 7e-41
Os03g0721900 Similar to Histone H2A 135 1e-32
Os12g0530856 133 5e-32
Os12g0530000 Similar to Histone H2A 133 5e-32
AK064299 129 9e-31
Os07g0545400 Similar to Histone H2A 128 2e-30
AK058540 128 2e-30
Os12g0438000 Similar to Histone H2A 128 2e-30
Os03g0743400 Similar to H2A protein 81 4e-16
Os03g0162200 Similar to Histone H2A 80 5e-16
Os10g0418000 Similar to Histone H2A 79 2e-15
>Os05g0461400 Similar to Histone H2A.2.1
Length = 163
Score = 163 bits (412), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/103 (80%), Positives = 85/103 (82%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRSVKAGLQFPVGRIGRYLK+GRY+QRIGTGAP GNAARDNK
Sbjct: 27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 86
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 87 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 129
>Os03g0279200 Similar to Histone H2A
Length = 159
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 85/103 (82%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAP GNAARDNK
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 88
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os01g0502700 Similar to Histone H2A
Length = 159
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/103 (82%), Positives = 85/103 (82%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAP GNAARDNK
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 88
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
>Os05g0113900 Similar to Histone H2A
Length = 156
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 85/103 (82%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRSVKAGLQFPVGRIGRYLKKGRYAQR+GTGAP GNAARDNK
Sbjct: 26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 85
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 86 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 128
>Os03g0721900 Similar to Histone H2A
Length = 137
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 74/103 (71%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRS KAGLQFPVGRI RYLK G+YA+R+G GAP GNAARDNK
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 78
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI VLLP
Sbjct: 79 KNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLP 121
>Os12g0530856
Length = 138
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 74/103 (71%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRS KAGLQFPVGRI RYLK G+YA+R+G GAP GNAARDNK
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 78
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 79 KNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
>Os12g0530000 Similar to Histone H2A
Length = 138
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 74/103 (71%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
VSRS KAGLQFPVGRI RYLK G+YA+R+G GAP GNAARDNK
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 78
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI+ LLP
Sbjct: 79 KNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121
>AK064299
Length = 149
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 72/103 (69%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
V + KAGLQFPVGRI RYLK G+YA+R+G GAP GNAARDNK
Sbjct: 31 VEMTTKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 90
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
KNRI+PRH+ LA+RNDEEL +LL VTIA GGVLPNI VLLP
Sbjct: 91 KNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLP 133
>Os07g0545400 Similar to Histone H2A
Length = 135
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
SRS KAGLQFPVGRI R+LK G+YA+R+G GAP GNAARDNK
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
K RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>AK058540
Length = 135
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
SRS KAGLQFPVGRI R+LK G+YA+R+G GAP GNAARDNK
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
K RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>Os12g0438000 Similar to Histone H2A
Length = 135
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 88
SRS KAGLQFPVGRI R+LK G+YA+R+G GAP GNAARDNK
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 89 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 131
K RI+PRH+ LA+RNDEEL KLL G TIA GGV+PNI+ LLP
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLP 119
>Os03g0743400 Similar to H2A protein
Length = 137
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 87
VSRS +AGLQFPVGRI R LK+ A R+G A GNA++D
Sbjct: 30 VSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 89
Query: 88 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 90 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 131
>Os03g0162200 Similar to Histone H2A
Length = 138
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPXXXXXXXXXXXXXXXXXXGNAARDN 87
VSRS +AGLQFPVGRI R LK A R+G A GNA++D
Sbjct: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
Query: 88 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
>Os10g0418000 Similar to Histone H2A
Length = 139
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ--RIGTGAPXXXXXXXXXXXXXXXXXXGNAARD 86
VSRS +AG+QFPVGRI R LK GR + R+G A GNA++D
Sbjct: 32 VSRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
Query: 87 NKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 91 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.142 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,837,235
Number of extensions: 81952
Number of successful extensions: 156
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 14
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)