Os10g0418000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2A.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0418000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Histone H2A.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.94 | 0.554 | 7.64 | -1.51 | 0.955 | 0.36 | 0.299 | -4.22 | -0.224 | 21.6 | 18.01 | 3959 | -- | -- |
| 151.21 | 0.577 | 7.48 | -0.403 | 1.07 | 0.825 | 0.0335 | -- | 0.0413 | 22.5 | 6.226 | 9010 | -- | -- |
| 139.26 | 0.55 | 7.64 | -1.5 | 0.952 | 0.362 | -- | -4.16 | -0.221 | 21.6 | 18 | 3980 | -- | -- |
| 151.21 | 0.576 | 7.48 | -0.405 | 1.07 | 0.826 | -- | -- | 0.0411 | 22.5 | -3.837 | 8999 | -- | -- |
| 183.28 | 0.631 | 7.72 | -2.52 | -- | 1.18 | -- | -8.23 | -0.489 | -- | 24.75 | 2301 | -- | -- |
| 157.7 | 0.589 | 7.46 | -0.239 | 0.969 | -- | 0.145 | -- | 0.157 | 21.7 | -- | -- | -- | -- |
| 157.78 | 0.588 | 7.46 | -0.244 | 0.968 | -- | -- | -- | 0.157 | 21.7 | -- | -- | -- | -- |
| 186.25 | 0.636 | 7.48 | -0.566 | -- | 1.32 | -- | -- | -0.0445 | -- | 10.65 | 715 | -- | -- |
| 155.12 | 0.583 | 7.47 | -- | 1.04 | 0.631 | -- | -- | 0.109 | 22.3 | 0.07211 | 8117 | -- | -- |
| 213.41 | 0.683 | 7.43 | -0.236 | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
| 159.35 | 0.59 | 7.45 | -- | 0.968 | -- | -- | -- | 0.184 | 21.7 | -- | -- | -- | -- |
| 192.57 | 0.646 | 7.46 | -- | -- | 0.944 | -- | -- | 0.0418 | -- | 18.7 | 709 | -- | -- |
| 214.88 | 0.684 | 7.43 | -- | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.86 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 4 | 132.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 5 | 132.32 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 6 | 132.38 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 7 | 132.41 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 10 | 132.62 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 12 | 132.67 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 16 | 132.86 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 24 | 133.18 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 33 | 133.36 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 38 | 133.37 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 39 | 133.37 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 40 | 133.37 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 55 | 133.38 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 73 | 133.41 | temperature | 25 | 43200 | < th | dose independent | sin | 7 | NA |
| 77 | 133.42 | temperature | 25 | 43200 | > th | dose independent | sin | 7 | NA |
| 84 | 133.43 | temperature | 25 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 93 | 133.44 | temperature | 25 | 43200 | > th | dose dependent | sin | 3 | NA |
| 134 | 133.50 | temperature | 25 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 185 | 133.56 | humidity | 80 | 43200 | < th | dose dependent | sin | 11 | NA |
| 224 | 133.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 240 | 133.62 | temperature | 25 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 244 | 133.63 | temperature | 25 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 269 | 133.64 | temperature | 25 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 294 | 133.65 | temperature | 25 | 43200 | > th | dose dependent | no | NA | NA |
| 347 | 133.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 429 | 133.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 431 | 133.74 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 436 | 133.75 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 438 | 133.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 468 | 133.82 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 476 | 133.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 489 | 133.84 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 496 | 133.85 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 497 | 133.85 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 525 | 133.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 575 | 133.94 | temperature | 25 | 43200 | < th | dose independent | sin | 14 | NA |
| 584 | 133.95 | temperature | 25 | 43200 | > th | dose independent | sin | 14 | NA |
| 625 | 134.01 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 641 | 134.03 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 723 | 134.13 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 737 | 134.15 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 759 | 134.18 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 766 | 134.19 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 768 | 134.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 773 | 134.20 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 784 | 134.21 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 792 | 134.22 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 798 | 134.23 | temperature | 25 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 819 | 134.26 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 23 |