BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0418000 Os10g0418000|AF193345
(139 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0418000 Similar to Histone H2A 219 6e-58
Os03g0162200 Similar to Histone H2A 207 1e-54
Os03g0743400 Similar to H2A protein 207 2e-54
Os07g0545400 Similar to Histone H2A 126 5e-30
AK058540 126 5e-30
Os12g0438000 Similar to Histone H2A 126 5e-30
Os12g0530856 125 7e-30
Os12g0530000 Similar to Histone H2A 125 7e-30
Os03g0721900 Similar to Histone H2A 120 2e-28
Os05g0113900 Similar to Histone H2A 120 3e-28
Os05g0461400 Similar to Histone H2A.2.1 117 2e-27
AK064299 116 4e-27
Os03g0279200 Similar to Histone H2A 115 1e-26
Os01g0502700 Similar to Histone H2A 115 1e-26
>Os10g0418000 Similar to Histone H2A
Length = 139
Score = 219 bits (558), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD
Sbjct: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE
Sbjct: 91 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
>Os03g0162200 Similar to Histone H2A
Length = 138
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/109 (94%), Positives = 107/109 (98%)
Query: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
PVSRSSRAG+QFPVGRIHRQLK R SA+GRVGATAAVY+AAILEYLTAEVLELAGNASKD
Sbjct: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE
Sbjct: 90 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
>Os03g0743400 Similar to H2A protein
Length = 137
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/109 (93%), Positives = 106/109 (97%)
Query: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
PVSRSSRAG+QFPVGRIHRQLK R ANGRVGATAAVY+AAILEYLTAEVLELAGNASKD
Sbjct: 29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKD 88
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct: 89 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
>Os07g0545400 Similar to Histone H2A
Length = 135
Score = 126 bits (316), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 33 SRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 92
SRSS+AG+QFPVGRI R LK A RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 93 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTA 137
RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K A
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
>AK058540
Length = 135
Score = 126 bits (316), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 33 SRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLK 92
SRSS+AG+QFPVGRI R LK A RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 93 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTA 137
RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K A
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
>Os12g0438000 Similar to Histone H2A
Length = 135
Score = 126 bits (316), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
SRSS+AG+QFPVGRI R LK A RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75
Query: 92 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTA 137
K RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K A
Sbjct: 76 KKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
>Os12g0530856
Length = 138
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
VSRSS+AG+QFPVGRI R LK A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 92 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
>Os12g0530000 Similar to Histone H2A
Length = 138
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
VSRSS+AG+QFPVGRI R LK A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 92 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
>Os03g0721900 Similar to Histone H2A
Length = 137
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
VSRSS+AG+QFPVGRI R LK A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 92 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLL 120
>Os05g0113900 Similar to Histone H2A
Length = 156
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 31 PVSRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASK 89
PVSRS +AG+QFPVGRI R LK GR + RVG A VY AA+LEYL AEVLELAGNA++
Sbjct: 25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQ--RVGTGAPVYLAAVLEYLAAEVLELAGNAAR 82
Query: 90 DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTAKE 139
D K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K E
Sbjct: 83 DNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
>Os05g0461400 Similar to Histone H2A.2.1
Length = 163
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 4/106 (3%)
Query: 32 VSRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
VSRS +AG+QFPVGRI R LK GR S R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 27 VSRSVKAGLQFPVGRIGRYLKQGRYSQ--RIGTGAPVYLAAVLEYLAAEVLELAGNAARD 84
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K
Sbjct: 85 NKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 130
>AK064299
Length = 149
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
PV +++AG+QFPVGRI R LK A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 30 PVEMTTKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARD 88
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+
Sbjct: 89 NKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLL 132
>Os03g0279200 Similar to Histone H2A
Length = 159
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 4/104 (3%)
Query: 32 VSRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
VSRS +AG+QFPVGRI R LK GR + R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ--RIGTGAPVYLAAVLEYLAAEVLELAGNAARD 86
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 87 NKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
>Os01g0502700 Similar to Histone H2A
Length = 159
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 4/104 (3%)
Query: 32 VSRSSRAGIQFPVGRIHRQLK-GRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
VSRS +AG+QFPVGRI R LK GR + R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ--RIGTGAPVYLAAVLEYLAAEVLELAGNAARD 86
Query: 91 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 133
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 87 NKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,382,350
Number of extensions: 112424
Number of successful extensions: 323
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 14
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)