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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0162200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0677) R2 : 0.487
β1 : -5.94 (0.416) R2dD : 1.04 R2D : -0.579
β2 : 0.988 (0.136) R2dC : 0.0614 R2C : -0.0316
β3 : 3.02 (0.183) R2dE : 0.489 R2E : 0.0305
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.8 (1.06) R2dD*E : 0.604 R2D*E : -0.692
γ1 : -1.01 (0.165) R2dN8 : 0.115 R2N8 : -0.261
σ : 1.01
deviance : 474.88
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_____
C
peak time of C : 8.73
E
wheather : temperature
threshold : 21.7
memory length : 1611
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.69
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.37 1.02 4.67 -5.91 1.01 2.98 -1.53 -11.7 -1.02 8.86 21.6 1640 5.81 --
591.93 1.13 4.36 -3.3 0.689 3.56 -1.29 -- -0.271 10.7 3.329 10552 5.61 --
474.88 1.01 4.67 -5.94 0.988 3.02 -- -11.8 -1.01 8.73 21.7 1611 5.69 --
590.07 1.13 4.35 -3.27 1.62 4.57 -- -- -0.297 11.9 -51.67 10479 7.22 --
513.83 1.06 4.69 -5.72 -- 2.95 -- -10.8 -0.935 -- 20.97 2074 4.17 --
763.93 1.3 4.1 -1.22 0.919 -- -1.41 -- 0.782 7.66 -- -- -- --
769.51 1.3 4.1 -1.26 0.922 -- -- -- 0.784 7.51 -- -- -- --
599.77 1.14 4.36 -3.24 -- 4.02 -- -- -0.264 -- -47.33 11230 7.77 --
745.57 1.27 4.12 -- 1.88 3.07 -- -- 0.631 11.7 -67.85 6282 8.67 --
815 1.33 4.12 -1.24 -- -- -- -- 0.798 -- -- -- -- --
811.13 1.33 4.07 -- 0.911 -- -- -- 0.924 7.61 -- -- -- --
742.13 1.27 4.16 -- -- 2.54 -- -- 0.633 -- -53.62 4144 8.32 --
855.74 1.37 4.09 -- -- -- -- -- 0.936 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 462.78 humidity 90 43200 < th dose independent rect. 9 19
2 463.05 humidity 90 43200 > th dose independent rect. 9 18
5 463.22 humidity 90 43200 < th dose independent rect. 10 17
14 465.63 humidity 90 43200 > th dose independent sin 17 NA
22 466.58 humidity 90 43200 < th dose independent sin 17 NA
25 467.11 humidity 90 43200 < th dose independent rect. 12 14
32 467.90 humidity 90 43200 > th dose independent rect. 13 12
43 469.21 humidity 90 43200 > th dose dependent rect. 9 18
57 470.09 humidity 90 43200 > th dose dependent sin 17 NA
58 470.16 humidity 90 43200 > th dose dependent rect. 11 15
70 470.80 humidity 90 43200 > th dose dependent rect. 13 12
91 472.11 humidity 90 43200 > th dose independent rect. 21 23
99 472.35 humidity 90 43200 > th dose independent no NA NA
104 472.50 humidity 90 43200 < th dose independent rect. 24 22
113 472.81 humidity 90 43200 > th dose independent rect. 23 23
121 472.94 humidity 90 43200 > th dose independent rect. 15 23
125 473.08 humidity 90 43200 < th dose independent no NA NA
132 473.22 humidity 90 43200 < th dose independent rect. 21 23
143 473.48 humidity 90 43200 > th dose independent rect. 2 23
144 473.49 humidity 90 43200 < th dose independent rect. 15 23
173 474.14 humidity 90 43200 < th dose independent rect. 2 23
184 474.47 humidity 90 43200 < th dose independent rect. 12 23
224 475.45 humidity 90 43200 > th dose dependent rect. 2 23
227 475.49 humidity 90 43200 > th dose dependent no NA NA
230 475.53 wind 3 43200 > th dose dependent rect. 11 4
235 475.66 humidity 90 43200 > th dose dependent rect. 21 23
238 475.75 humidity 90 43200 > th dose dependent rect. 24 23
271 476.23 humidity 90 43200 > th dose dependent rect. 15 23
358 478.18 wind 3 43200 > th dose dependent rect. 13 1
430 480.07 humidity 90 43200 > th dose dependent rect. 22 1
473 481.27 humidity 90 43200 > th dose independent rect. 21 2
482 481.48 radiation 20 43200 < th dose independent rect. 3 6
484 481.49 radiation 20 43200 < th dose independent rect. 1 8
487 481.50 radiation 20 43200 < th dose independent rect. 19 14
491 481.52 radiation 20 43200 < th dose independent rect. 22 11
530 482.48 wind 5 43200 > th dose independent rect. 12 3
551 483.03 radiation 10 43200 > th dose dependent rect. 6 1
555 483.10 wind 5 43200 < th dose independent rect. 11 4
581 483.37 wind 5 43200 > th dose independent rect. 11 5
582 483.38 humidity 90 43200 > th dose dependent sin 4 NA
662 485.84 humidity 90 43200 > th dose independent sin 5 NA
678 486.22 humidity 90 43200 > th dose independent rect. 18 1
685 486.45 wind 5 43200 < th dose independent rect. 10 7
688 486.65 humidity 90 43200 < th dose independent rect. 21 2
690 486.68 wind 9 43200 < th dose dependent rect. 11 4
692 486.71 wind 5 43200 > th dose independent rect. 10 7
701 486.98 humidity 90 43200 < th dose independent rect. 18 1
714 487.30 humidity 80 43200 < th dose independent rect. 13 1
741 487.88 temperature 20 1440 > th dose dependent rect. 19 12
791 488.94 humidity 90 43200 < th dose independent rect. 20 4
839 489.55 temperature 20 1440 > th dose dependent rect. 4 3
864 490.10 temperature 20 43200 > th dose dependent rect. 6 1
867 490.16 humidity 80 43200 > th dose independent rect. 13 2
887 490.55 humidity 90 43200 < th dose independent sin 4 NA
912 491.09 temperature 20 1440 > th dose dependent rect. 21 2
941 491.60 temperature 20 1440 > th dose dependent sin 11 NA
975 492.21 temperature 25 43200 > th dose dependent rect. 11 1
983 492.36 temperature 20 43200 > th dose dependent rect. 21 1
999 492.65 temperature 20 43200 > th dose dependent rect. 21 11