BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0162200 Os03g0162200|AK121533
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0162200 Similar to Histone H2A 219 5e-58
Os03g0743400 Similar to H2A protein 209 5e-55
Os10g0418000 Similar to Histone H2A 208 1e-54
Os12g0530856 127 2e-30
Os12g0530000 Similar to Histone H2A 127 2e-30
Os07g0545400 Similar to Histone H2A 127 3e-30
AK058540 127 3e-30
Os12g0438000 Similar to Histone H2A 127 4e-30
Os03g0721900 Similar to Histone H2A 122 6e-29
Os05g0113900 Similar to Histone H2A 122 6e-29
AK064299 119 9e-28
Os05g0461400 Similar to Histone H2A.2.1 117 3e-27
Os03g0279200 Similar to Histone H2A 116 5e-27
Os01g0502700 Similar to Histone H2A 116 5e-27
>Os03g0162200 Similar to Histone H2A
Length = 138
Score = 219 bits (558), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD
Sbjct: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
Query: 90 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE
Sbjct: 90 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
>Os03g0743400 Similar to H2A protein
Length = 137
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/109 (95%), Positives = 106/109 (97%)
Query: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
PVSRSSRAGLQFPVGRIHRQLK R A+GRVGATAAVYSAAILEYLTAEVLELAGNASKD
Sbjct: 29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKD 88
Query: 90 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct: 89 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
>Os10g0418000 Similar to Histone H2A
Length = 139
Score = 208 bits (529), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/109 (94%), Positives = 107/109 (98%)
Query: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
PVSRSSRAG+QFPVGRIHRQLK R SA+GRVGATAAVY+AAILEYLTAEVLELAGNASKD
Sbjct: 31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKD 90
Query: 90 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+KE
Sbjct: 91 LKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
>Os12g0530856
Length = 138
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
>Os12g0530000 Similar to Histone H2A
Length = 138
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
>Os07g0545400 Similar to Histone H2A
Length = 135
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 32 SRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 91
SRSS+AGLQFPVGRI R LK+ A RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 92 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
>AK058540
Length = 135
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 81/104 (77%), Gaps = 2/104 (1%)
Query: 32 SRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 91
SRSS+AGLQFPVGRI R LK+ A RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 92 VKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 134
RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
>Os12g0438000 Similar to Histone H2A
Length = 135
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
SRSS+AGLQFPVGRI R LK+ A RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 17 TSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTS 136
K RI PRH+QLA+R DEEL L+ G TIA GGV+P+IH+ L+ K +
Sbjct: 76 KKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
>Os03g0721900 Similar to Histone H2A
Length = 137
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRSS+AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLL 120
>Os05g0113900 Similar to Histone H2A
Length = 156
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Query: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
PVSRS +AGLQFPVGRI R LK A RVG A VY AA+LEYL AEVLELAGNA++D
Sbjct: 25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARD 83
Query: 90 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTSKE 138
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K + E
Sbjct: 84 NKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
>AK064299
Length = 149
Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 2/104 (1%)
Query: 30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 89
PV +++AGLQFPVGRI R LK+ A RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 30 PVEMTTKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARD 88
Query: 90 LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+
Sbjct: 89 NKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLL 132
>Os05g0461400 Similar to Histone H2A.2.1
Length = 163
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 2/107 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRS +AGLQFPVGRI R LK + R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 27 VSRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDN 85
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTS 136
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K +
Sbjct: 86 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
>Os03g0279200 Similar to Histone H2A
Length = 159
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRS +AGLQFPVGRI R LK A R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDN 87
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 88 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
>Os01g0502700 Similar to Histone H2A
Length = 159
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
VSRS +AGLQFPVGRI R LK A R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDN 87
Query: 91 KVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 132
K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+
Sbjct: 88 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,367,832
Number of extensions: 111071
Number of successful extensions: 363
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 14
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)