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Os12g0530000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.93 (0.031) R2 : 0.321
β1 : -0.799 (0.112) R2dD : 0.0781 R2D : 0.00565
β2 : 1.74 (0.144) R2dC : 0.845 R2C : -0.433
β3 : -1.26 (0.121) R2dE : 0.623 R2E : -0.676
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.448 (0.0657) R2dN8 : 0.0937 R2N8 : 0.0187
σ : 0.573
deviance : 151.54
__
_____
C
peak time of C : 22.8
E
wheather : radiation
threshold : 17.06
memory length : 21
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.58 0.543 9.93 -0.876 1.67 -1.19 -2.05 -0.0415 -0.449 22.6 16.39 22 -- --
133.58 0.538 9.93 -0.877 1.67 -1.19 -2.09 -- -0.449 22.6 16.42 21 -- --
139.2 0.554 9.91 -0.853 1.55 -1.06 -- -1.71 -0.386 22.5 16.39 22 -- --
151.54 0.573 9.93 -0.799 1.74 -1.26 -- -- -0.448 22.8 17.06 21 -- --
181.02 0.63 9.87 -0.84 -- 0.0111 -- -2 -0.384 -- 24.34 73 -- --
160.22 0.593 9.89 -0.85 0.61 -- -2.37 -- -0.375 20.7 -- -- -- --
177.8 0.624 9.89 -0.766 0.643 -- -- -- -0.371 20 -- -- -- --
192.33 0.646 9.87 -0.763 -- 0.245 -- -- -0.378 -- 6.16e-05 5 -- --
168.23 0.604 9.91 -- 1.73 -1.24 -- -- -0.359 22.7 16.15 21 -- --
200.37 0.661 9.87 -0.773 -- -- -- -- -0.38 -- -- -- -- --
193.28 0.65 9.87 -- 0.649 -- -- -- -0.286 19.9 -- -- -- --
207.62 0.671 9.87 -- -- 0.282 -- -- -0.359 -- 4.559e-08 7 -- --
216.13 0.686 9.85 -- -- -- -- -- -0.294 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.59 radiation 10.0 30 < th dose dependent rect. 2 17
5 124.79 radiation 10.0 30 < th dose dependent sin 1 NA
6 124.90 radiation 10.0 30 < th dose independent rect. 2 17
7 125.07 radiation 20.0 30 < th dose dependent rect. 24 19
13 126.42 radiation 10.0 30 < th dose independent rect. 24 19
15 126.71 radiation 40.0 30 < th dose dependent rect. 13 17
59 128.87 radiation 20.0 30 < th dose independent rect. 12 18
93 130.08 wind 9.0 4320 < th dose independent rect. 1 6
100 130.25 precipitation 0.1 270 < th dose independent rect. 3 23
102 130.25 precipitation 0.1 270 < th dose dependent rect. 3 23
112 130.43 precipitation 0.1 270 < th dose independent rect. 4 9
113 130.43 precipitation 0.1 270 < th dose dependent rect. 4 9
114 130.45 temperature 15.0 10 > th dose independent rect. 6 20
120 130.58 radiation 1.0 90 < th dose independent sin 2 NA
124 130.68 wind 9.0 270 < th dose independent rect. 4 9
125 130.69 temperature 10.0 270 > th dose independent rect. 4 9
126 130.69 atmosphere 995.0 270 > th dose independent rect. 4 9
127 130.69 atmosphere 1015.0 270 < th dose independent rect. 4 9
128 130.69 temperature 10.0 270 > th dose independent rect. 13 15
138 130.85 atmosphere 995.0 270 > th dose independent rect. 13 15
145 130.96 humidity 70.0 10 > th dose dependent rect. 2 18
152 131.08 radiation 40.0 270 < th dose independent rect. 13 15
156 131.21 radiation 1.0 90 > th dose independent sin 2 NA
171 131.33 radiation 20.0 10 < th dose dependent rect. 24 23
172 131.34 temperature 15.0 270 > th dose independent rect. 17 7
180 131.53 radiation 20.0 10 < th dose dependent rect. 10 20
206 131.81 atmosphere 1010.0 10 < th dose independent rect. 2 5
215 131.91 wind 1.0 270 > th dose independent rect. 4 9
218 131.95 wind 3.0 270 < th dose independent rect. 2 1
243 132.22 radiation 10.0 30 < th dose independent rect. 24 23
246 132.26 humidity 50.0 270 > th dose independent rect. 4 9
248 132.27 wind 9.0 4320 < th dose independent rect. 3 4
253 132.34 wind 9.0 270 < th dose independent rect. 13 15
260 132.40 radiation 1.0 90 > th dose independent rect. 6 9
261 132.42 precipitation 0.1 30 < th dose independent rect. 6 20
262 132.42 precipitation 0.1 30 < th dose dependent rect. 6 20
268 132.55 temperature 15.0 30 > th dose independent rect. 6 18
269 132.55 wind 9.0 270 < th dose independent rect. 3 23
270 132.60 wind 9.0 270 < th dose dependent rect. 2 1
281 132.69 humidity 50.0 10 > th dose dependent rect. 2 17
286 132.77 wind 3.0 270 < th dose independent rect. 24 4
288 132.82 radiation 20.0 90 < th dose independent rect. 15 15
298 132.87 wind 9.0 10 < th dose independent rect. 6 20
315 132.98 radiation 1.0 10 > th dose independent rect. 6 10
317 133.01 wind 9.0 30 < th dose dependent rect. 2 4
321 133.06 wind 5.0 10 < th dose independent rect. 2 4
322 133.06 wind 3.0 90 < th dose independent rect. 24 6
327 133.09 wind 1.0 270 > th dose independent rect. 13 15
331 133.11 humidity 60.0 10 > th dose dependent rect. 2 4
337 133.16 humidity 50.0 270 > th dose dependent rect. 2 1
340 133.17 temperature 25.0 30 < th dose independent rect. 2 18
356 133.22 radiation 20.0 30 < th dose dependent rect. 2 5
365 133.26 atmosphere 1000.0 270 > th dose independent rect. 2 1
366 133.26 radiation 10.0 30 < th dose independent rect. 2 5
383 133.36 atmosphere 1000.0 10 > th dose independent rect. 2 4
389 133.37 atmosphere 995.0 30 > th dose dependent rect. 2 4
393 133.41 radiation 10.0 30 < th dose independent rect. 2 12
395 133.41 radiation 10.0 30 < th dose dependent rect. 2 8
422 133.56 precipitation 0.1 270 < th dose independent rect. 2 1
423 133.56 precipitation 0.1 270 < th dose dependent rect. 2 1
426 133.57 temperature 10.0 10 > th dose independent rect. 2 4
428 133.57 temperature 30.0 10 < th dose independent rect. 2 4
429 133.57 humidity 50.0 10 > th dose independent rect. 2 4
439 133.57 radiation 40.0 30 < th dose dependent rect. 2 4
441 133.58 temperature 10.0 270 > th dose independent rect. 2 1
443 133.58 temperature 30.0 270 < th dose independent rect. 2 1
444 133.58 humidity 50.0 270 > th dose independent rect. 2 1
448 133.58 atmosphere 1010.0 270 < th dose independent rect. 2 1
450 133.58 radiation 1.0 270 < th dose independent rect. 2 1
455 133.58 temperature 10.0 270 > th dose independent rect. 3 23
456 133.58 radiation 1.0 270 < th dose dependent rect. 2 1
496 133.67 precipitation 0.1 270 < th dose independent rect. 17 7
497 133.67 wind 7.0 90 < th dose dependent rect. 24 6
498 133.67 precipitation 0.1 270 < th dose dependent rect. 17 7
499 133.67 humidity 70.0 10 > th dose dependent rect. 24 20
512 133.73 temperature 10.0 1440 > th dose independent rect. 3 4
515 133.73 temperature 30.0 1440 < th dose independent rect. 3 4
519 133.73 humidity 50.0 1440 > th dose independent rect. 3 4
524 133.73 atmosphere 995.0 1440 > th dose independent rect. 3 4
525 133.73 radiation 40.0 1440 < th dose independent rect. 3 4
530 133.73 temperature 10.0 1440 > th dose independent rect. 7 20
538 133.76 atmosphere 995.0 270 > th dose dependent rect. 2 1
545 133.79 atmosphere 1015.0 270 < th dose independent rect. 13 15
547 133.79 radiation 20.0 10 < th dose independent rect. 10 20
555 133.86 precipitation 0.1 270 < th dose independent rect. 4 20
557 133.86 precipitation 0.1 270 < th dose dependent rect. 4 20
562 133.89 precipitation 0.1 30 < th dose independent rect. 2 4
563 133.89 precipitation 0.1 30 < th dose dependent rect. 2 4
577 133.97 wind 9.0 270 < th dose dependent rect. 24 4
587 133.99 atmosphere 995.0 90 > th dose dependent rect. 24 6
596 134.03 temperature 15.0 270 > th dose independent rect. 24 17
606 134.08 atmosphere 1010.0 30 < th dose independent rect. 24 7
638 134.18 atmosphere 995.0 270 > th dose independent rect. 24 17
645 134.19 atmosphere 995.0 270 > th dose dependent rect. 24 4
661 134.23 humidity 60.0 90 > th dose dependent rect. 24 6
713 134.34 temperature 10.0 270 > th dose dependent rect. 2 1
741 134.45 temperature 10.0 30 > th dose dependent rect. 2 4
769 134.55 humidity 70.0 10 > th dose dependent rect. 24 7
781 134.59 precipitation 0.1 270 < th dose independent rect. 13 15
783 134.59 precipitation 0.1 270 < th dose dependent rect. 13 15
791 134.62 wind 9.0 270 < th dose independent rect. 17 7
796 134.64 humidity 50.0 10 > th dose independent rect. 6 20
814 134.71 humidity 50.0 270 > th dose independent rect. 17 7
816 134.72 humidity 50.0 270 > th dose independent rect. 5 19
837 134.80 atmosphere 1015.0 270 < th dose independent rect. 24 17
841 134.81 radiation 20.0 270 < th dose independent rect. 17 7
848 134.83 wind 3.0 10 < th dose independent rect. 24 6
881 134.97 humidity 80.0 270 > th dose independent rect. 24 4
895 135.04 atmosphere 1015.0 270 < th dose independent rect. 24 4
900 135.04 radiation 40.0 270 < th dose dependent rect. 17 7
901 135.05 temperature 10.0 270 > th dose independent rect. 24 4
902 135.05 temperature 30.0 270 < th dose independent rect. 24 4
903 135.05 humidity 50.0 270 > th dose independent rect. 24 4
907 135.05 radiation 1.0 270 < th dose independent rect. 24 4
912 135.05 temperature 10.0 270 > th dose independent rect. 4 20
913 135.05 radiation 1.0 270 < th dose dependent rect. 24 4
932 135.08 radiation 20.0 30 < th dose dependent no NA NA
934 135.08 radiation 20.0 30 < th dose dependent rect. 15 23
968 135.13 atmosphere 995.0 10 > th dose independent rect. 6 20
980 135.19 radiation 10.0 30 < th dose independent rect. 24 7