BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0530000 Os12g0530000|AK121752
(138 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54690.1 | chr1:20414607-20415206 REVERSE LENGTH=143 168 9e-43
AT1G08880.1 | chr1:2847144-2847676 REVERSE LENGTH=143 167 1e-42
AT4G27230.1 | chr4:13637515-13638325 REVERSE LENGTH=132 144 2e-35
AT5G54640.1 | chr5:22196540-22197279 FORWARD LENGTH=131 143 3e-35
AT1G51060.1 | chr1:18926948-18927443 FORWARD LENGTH=133 140 1e-34
AT3G20670.1 | chr3:7229472-7229963 FORWARD LENGTH=133 139 4e-34
AT5G27670.1 | chr5:9792807-9793365 REVERSE LENGTH=151 123 2e-29
AT5G59870.1 | chr5:24115605-24116144 REVERSE LENGTH=151 122 5e-29
AT5G02560.2 | chr5:575437-576456 FORWARD LENGTH=178 111 1e-25
AT1G52740.1 | chr1:19645409-19646221 FORWARD LENGTH=135 80 4e-16
AT3G54560.1 | chr3:20196532-20197466 FORWARD LENGTH=137 79 6e-16
AT2G38810.1 | chr2:16219444-16220679 REVERSE LENGTH=137 79 8e-16
AT4G13570.2 | chr4:7884582-7885664 FORWARD LENGTH=125 54 3e-08
>AT1G54690.1 | chr1:20414607-20415206 REVERSE LENGTH=143
Length = 142
Score = 168 bits (425), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 89/112 (79%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 31 LQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRH 90
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLP K GK+K DIGSASQEF
Sbjct: 91 IQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
>AT1G08880.1 | chr1:2847144-2847676 REVERSE LENGTH=143
Length = 142
Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 89/112 (79%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LK+GKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 31 LQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRH 90
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
IQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLP K GK+K DIGSASQEF
Sbjct: 91 IQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
>AT4G27230.1 | chr4:13637515-13638325 REVERSE LENGTH=132
Length = 131
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 76/102 (74%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDK 128
IQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G K
Sbjct: 85 IQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSK 126
>AT5G54640.1 | chr5:22196540-22197279 FORWARD LENGTH=131
Length = 130
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 76/102 (74%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDK 128
IQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G K
Sbjct: 85 IQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASK 126
>AT1G51060.1 | chr1:18926948-18927443 FORWARD LENGTH=133
Length = 132
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 75/102 (73%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LK GKYAERVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDK 128
IQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G K
Sbjct: 85 IQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126
>AT3G20670.1 | chr3:7229472-7229963 FORWARD LENGTH=133
Length = 132
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 74/102 (72%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIAR+LK GKYA RVGAGAP GNAARDNKK RIVPRH
Sbjct: 25 LQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDK 128
IQLAVRNDEELS+LLG VTIA GGV+PNIH LLPKK G K
Sbjct: 85 IQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126
>AT5G27670.1 | chr5:9792807-9793365 REVERSE LENGTH=151
Length = 150
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 72/109 (66%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRIARYLK G+YA R G+GAP GNAARDNKKNRI PRH
Sbjct: 34 LQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRH 93
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSAS 135
+ LA+RNDEEL RLL VTIA+GGVLPNI+ LLPKK + AS
Sbjct: 94 LCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSSQAEKAS 142
>AT5G59870.1 | chr5:24115605-24116144 REVERSE LENGTH=151
Length = 150
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 71/104 (68%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRH 86
LQFPVGRI R+LK G+YA+R+G GAP GNAARDNKK+RI+PRH
Sbjct: 33 LQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRH 92
Query: 87 IQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKAD 130
+ LA+RNDEEL +LL VTIA GGVLPNI+ LLPKK A+
Sbjct: 93 LLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATKPAE 136
>AT5G02560.2 | chr5:575437-576456 FORWARD LENGTH=178
Length = 177
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 69/124 (55%), Gaps = 24/124 (19%)
Query: 27 LQFPVGRIARYLKAGKYAERVGAGAP------------------------XXXXXXXXXX 62
LQFPVGRI RYLK G+Y++RVG GAP
Sbjct: 33 LQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAENSCGFCSVASLTIYRCRMSSS 92
Query: 63 XXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
GNAARDNKKNRI+PRH+ LAVRNDEEL LL VTIA GGVLPNI+ LLPK
Sbjct: 93 DFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 152
Query: 123 KGGK 126
K K
Sbjct: 153 KSEK 156
>AT1G52740.1 | chr1:19645409-19646221 FORWARD LENGTH=135
Length = 134
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
LQFPVGR+ R LK A RVGA A GNA++D K RI PR
Sbjct: 35 LQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPR 94
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 95 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 130
>AT3G54560.1 | chr3:20196532-20197466 FORWARD LENGTH=137
Length = 136
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
+QFPVGRI R LK A RVGA A GNA++D K RI PR
Sbjct: 37 IQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 97 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132
>AT2G38810.1 | chr2:16219444-16220679 REVERSE LENGTH=137
Length = 136
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 27 LQFPVGRIARYLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
+QFPVGRI R LK A RVGA A GNA++D K RI PR
Sbjct: 37 IQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPR 96
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
H+QLA+R DEEL L+ TIA GGV+P+IH++L+ K
Sbjct: 97 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132
>AT4G13570.2 | chr4:7884582-7885664 FORWARD LENGTH=125
Length = 124
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 27 LQFPVGRIARYLKAGKYAER-VGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPR 85
++F V RI + LK A VGA N ++D K RI PR
Sbjct: 35 IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94
Query: 86 HIQLAVRNDEELSRLLGAVTIAAGGVLPNIH 116
H+QLA+R DEEL L+ TI G V+P+IH
Sbjct: 95 HLQLAIRGDEELDTLIKG-TIIGGSVIPHIH 124
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,955,752
Number of extensions: 59748
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 14
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)