Os05g0113900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2A.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0113900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Histone H2A.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.15 | 0.431 | 9.75 | 0.259 | 0.463 | -1.72 | 0.15 | -0.186 | 0.155 | 20.7 | 15.3 | 87 | -- | -- |
| 84.18 | 0.427 | 9.75 | 0.282 | 0.467 | -1.72 | 0.153 | -- | 0.161 | 20.7 | 15.43 | 86 | -- | -- |
| 84.22 | 0.427 | 9.75 | 0.248 | 0.462 | -1.72 | -- | -0.228 | 0.154 | 20.7 | 15.3 | 86 | -- | -- |
| 84.26 | 0.428 | 9.75 | 0.281 | 0.454 | -1.7 | -- | -- | 0.164 | 20.6 | 15.79 | 78 | -- | -- |
| 93.2 | 0.452 | 9.74 | 0.238 | -- | -1.78 | -- | -0.22 | 0.157 | -- | 15.3 | 86 | -- | -- |
| 115.7 | 0.504 | 9.8 | -0.0706 | 0.654 | -- | 0.394 | -- | -0.0897 | 0.167 | -- | -- | -- | -- |
| 116.37 | 0.505 | 9.8 | -0.0858 | 0.653 | -- | -- | -- | -0.0913 | 0.113 | -- | -- | -- | -- |
| 93.13 | 0.449 | 9.73 | 0.274 | -- | -1.6 | -- | -- | 0.151 | -- | 17.54 | 5 | -- | -- |
| 86.1 | 0.432 | 9.76 | -- | 0.46 | -1.57 | -- | -- | 0.121 | 20.9 | 15.96 | 78 | -- | -- |
| 143.2 | 0.559 | 9.79 | -0.065 | -- | -- | -- | -- | -0.0818 | -- | -- | -- | -- | -- |
| 116.56 | 0.505 | 9.8 | -- | 0.652 | -- | -- | -- | -0.0818 | 0.106 | -- | -- | -- | -- |
| 94.72 | 0.453 | 9.74 | -- | -- | -1.54 | -- | -- | 0.128 | -- | 17.51 | 4 | -- | -- |
| 143.31 | 0.559 | 9.79 | -- | -- | -- | -- | -- | -0.0746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 3 | 81.64 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 8 | 81.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 20 | 83.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 24 | 83.33 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 47 | 84.21 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 101 | 85.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 104 | 85.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 129 | 86.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 130 | 86.15 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 133 | 86.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 141 | 86.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 147 | 86.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 149 | 86.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 150 | 86.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 153 | 86.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 156 | 86.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 164 | 86.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 178 | 86.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 210 | 87.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 237 | 87.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 268 | 87.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 292 | 88.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 301 | 88.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 403 | 88.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 434 | 89.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 534 | 89.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 582 | 90.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 726 | 90.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 742 | 90.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 799 | 91.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 811 | 91.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 812 | 91.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 869 | 91.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 13 |