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Os07g0545400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Histone H2A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.9 (0.019) R2 : 0.516
β1 : 1.02 (0.0696) R2dD : 0.236 R2D : 0.173
β2 : 0.798 (0.0482) R2dC : 0.291 R2C : 0.259
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.267 (0.0406) R2dN8 : 0.0617 R2N8 : 0.000861
σ : 0.357
deviance : 58.21
__
_____
C
peak time of C : 15.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.83 0.335 15.9 0.978 0.639 0.618 -0.852 0.1 0.22 19.8 1.37 90 -- --
50.87 0.332 15.9 0.977 0.637 0.622 -0.919 -- 0.22 19.9 1.34 90 -- --
52.16 0.336 15.9 1.02 0.666 0.578 -- 0.424 0.231 19.4 2.27 68 -- --
53.17 0.34 15.9 1.02 0.677 0.566 -- -- 0.229 19.4 2.21 65 -- --
57.17 0.352 15.9 0.785 -- 0.736 -- 0.457 0.325 -- 0.1762 487 -- --
58.21 0.358 15.9 1.02 0.797 -- 0.0443 -- 0.267 15.8 -- -- -- --
58.21 0.357 15.9 1.02 0.798 -- -- -- 0.267 15.9 -- -- -- --
54.87 0.345 15.9 0.983 -- 0.815 -- -- 0.342 -- 0.2396 522 -- --
80.15 0.417 16 -- 0.725 0.594 -- -- 0.182 19.7 0.8901 75 -- --
93.21 0.451 15.9 0.986 -- -- -- -- 0.246 -- -- -- -- --
85.59 0.433 15.9 -- 0.778 -- -- -- 0.154 15.9 -- -- -- --
77.78 0.411 15.9 -- -- 0.906 -- -- 0.194 -- 0.18 533 -- --
118.86 0.509 15.9 -- -- -- -- -- 0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.63 atmosphere 995.0 270 > th dose dependent rect. 24 4
2 46.64 temperature 10.0 270 > th dose dependent rect. 4 20
3 46.65 temperature 25.0 90 < th dose independent rect. 1 19
5 46.81 temperature 25.0 90 < th dose independent rect. 1 16
8 46.97 atmosphere 1000.0 270 > th dose independent rect. 24 4
9 46.97 precipitation 0.1 270 < th dose independent rect. 3 22
10 46.97 precipitation 0.1 270 < th dose dependent rect. 3 22
11 47.03 atmosphere 1000.0 270 > th dose independent rect. 1 2
14 47.18 atmosphere 995.0 270 > th dose dependent rect. 1 2
16 47.19 temperature 10.0 720 > th dose dependent rect. 4 4
17 47.24 wind 1.0 270 > th dose independent rect. 24 4
18 47.25 temperature 30.0 10 < th dose dependent rect. 1 19
24 47.39 radiation 1.0 90 > th dose independent sin 2 NA
29 47.42 precipitation 0.1 270 < th dose independent rect. 4 20
30 47.42 precipitation 0.1 270 < th dose dependent rect. 4 20
31 47.43 temperature 30.0 270 < th dose dependent rect. 1 2
50 47.68 radiation 20.0 270 < th dose independent rect. 19 13
53 47.70 wind 1.0 270 > th dose independent rect. 1 2
60 47.73 wind 7.0 270 < th dose independent rect. 1 2
61 47.73 wind 7.0 270 < th dose independent rect. 24 4
65 47.78 temperature 10.0 270 > th dose independent rect. 1 2
67 47.78 temperature 30.0 270 < th dose independent rect. 1 2
68 47.78 humidity 50.0 270 > th dose independent rect. 1 2
72 47.78 atmosphere 1010.0 270 < th dose independent rect. 1 2
74 47.78 radiation 1.0 270 < th dose independent rect. 1 2
79 47.78 temperature 10.0 270 > th dose independent rect. 3 22
80 47.78 radiation 1.0 270 < th dose dependent rect. 1 2
85 47.79 precipitation 0.1 270 < th dose independent rect. 1 2
86 47.79 atmosphere 1015.0 270 < th dose independent rect. 24 4
87 47.79 precipitation 0.1 270 < th dose dependent rect. 1 2
89 47.80 temperature 10.0 270 > th dose independent rect. 24 4
90 47.80 temperature 30.0 270 < th dose independent rect. 24 4
91 47.80 humidity 50.0 270 > th dose independent rect. 24 4
96 47.80 radiation 1.0 270 < th dose independent rect. 24 4
104 47.80 temperature 10.0 270 > th dose independent rect. 4 20
105 47.80 radiation 1.0 270 < th dose dependent rect. 24 4
119 47.88 precipitation 0.1 270 < th dose independent rect. 24 4
120 47.88 precipitation 0.1 270 < th dose dependent rect. 24 4
121 47.91 temperature 10.0 10 > th dose dependent rect. 6 18
129 47.96 wind 9.0 270 < th dose independent rect. 4 20
131 47.98 temperature 30.0 10 < th dose dependent rect. 2 15
135 48.00 radiation 1.0 720 > th dose independent rect. 12 5
136 48.00 radiation 10.0 720 < th dose independent rect. 21 10
139 48.06 temperature 30.0 270 < th dose dependent rect. 24 4
141 48.07 precipitation 0.1 90 < th dose independent rect. 6 19
142 48.07 precipitation 0.1 90 < th dose dependent rect. 6 19
163 48.20 radiation 20.0 10 < th dose dependent rect. 14 16
168 48.24 radiation 40.0 90 < th dose independent rect. 6 19
171 48.25 atmosphere 995.0 10 > th dose dependent rect. 2 4
172 48.26 wind 9.0 270 < th dose independent rect. 3 22
174 48.27 radiation 10.0 270 < th dose independent rect. 5 19
198 48.38 atmosphere 1000.0 10 > th dose independent rect. 2 4
200 48.39 humidity 50.0 10 > th dose independent rect. 6 20
201 48.39 radiation 40.0 10 < th dose independent rect. 6 20
202 48.39 humidity 50.0 270 > th dose dependent rect. 1 2
204 48.40 radiation 10.0 720 < th dose independent rect. 5 2
210 48.42 temperature 30.0 10 < th dose dependent rect. 2 4
213 48.44 atmosphere 995.0 270 > th dose independent rect. 4 20
217 48.45 radiation 1.0 270 < th dose dependent rect. 22 22
219 48.46 wind 1.0 270 > th dose independent rect. 4 20
243 48.49 temperature 10.0 90 > th dose independent rect. 6 19
246 48.50 wind 9.0 90 < th dose independent rect. 6 19
247 48.51 radiation 1.0 90 > th dose independent rect. 17 23
264 48.55 atmosphere 1015.0 270 < th dose independent rect. 15 13
274 48.57 humidity 50.0 270 > th dose dependent rect. 24 4
315 48.59 wind 9.0 270 < th dose dependent rect. 1 2
316 48.59 wind 9.0 270 < th dose dependent rect. 24 4
371 48.68 radiation 30.0 270 < th dose independent rect. 15 13
391 48.73 temperature 10.0 270 > th dose dependent rect. 4 10
418 48.83 precipitation 0.1 10 < th dose independent rect. 6 20
423 48.83 precipitation 0.1 10 < th dose dependent rect. 6 20
426 48.84 radiation 10.0 720 < th dose dependent rect. 17 2
431 48.86 humidity 90.0 720 < th dose dependent rect. 12 1
432 48.86 radiation 30.0 10 < th dose dependent rect. 2 4
438 48.87 temperature 10.0 10 > th dose dependent rect. 6 10
444 48.88 radiation 10.0 270 < th dose dependent rect. 4 20
445 48.89 radiation 20.0 720 < th dose independent rect. 16 4
454 48.91 precipitation 0.1 720 < th dose independent rect. 12 12
455 48.91 precipitation 0.1 720 < th dose dependent rect. 12 12
460 48.92 radiation 1.0 720 < th dose dependent rect. 24 19
462 48.93 radiation 40.0 270 < th dose dependent rect. 19 13
473 48.95 atmosphere 995.0 270 > th dose independent rect. 3 22
476 48.96 atmosphere 995.0 270 > th dose dependent rect. 24 19
477 48.96 radiation 40.0 270 < th dose dependent rect. 5 19
496 49.01 atmosphere 995.0 90 > th dose independent rect. 6 19
504 49.03 wind 9.0 10 < th dose independent rect. 2 4
505 49.03 temperature 10.0 10 > th dose independent rect. 2 4
507 49.03 temperature 30.0 10 < th dose independent rect. 2 4
508 49.03 humidity 50.0 10 > th dose independent rect. 2 4
513 49.03 atmosphere 1010.0 10 < th dose independent rect. 2 4
515 49.03 radiation 20.0 10 < th dose independent rect. 2 4
518 49.03 wind 1.0 90 > th dose independent rect. 6 19
519 49.03 temperature 10.0 10 > th dose independent rect. 6 20
522 49.04 radiation 30.0 720 < th dose dependent rect. 16 4
524 49.04 humidity 50.0 10 > th dose dependent rect. 16 14
531 49.06 temperature 30.0 90 < th dose dependent rect. 3 2
533 49.07 humidity 90.0 270 < th dose independent rect. 20 2
554 49.09 radiation 1.0 10 > th dose independent rect. 6 10
558 49.10 precipitation 0.1 270 < th dose independent rect. 4 11
561 49.10 precipitation 0.1 270 < th dose dependent rect. 4 11
564 49.11 humidity 50.0 270 > th dose independent rect. 14 14
565 49.11 wind 9.0 10 < th dose independent rect. 6 20
577 49.14 radiation 1.0 90 < th dose independent rect. 1 15
579 49.14 radiation 1.0 90 < th dose dependent sin 2 NA
582 49.15 wind 1.0 10 > th dose independent rect. 6 20
594 49.18 radiation 1.0 90 < th dose dependent rect. 1 15
596 49.19 precipitation 0.1 10 < th dose independent rect. 2 4
598 49.19 radiation 1.0 90 < th dose independent rect. 24 23
601 49.19 precipitation 0.1 10 < th dose dependent rect. 2 4
608 49.20 wind 9.0 270 < th dose independent rect. 4 11
609 49.20 radiation 1.0 90 < th dose independent rect. 1 12
626 49.21 radiation 1.0 90 < th dose dependent rect. 1 12
628 49.22 radiation 1.0 90 < th dose independent rect. 1 9
640 49.23 temperature 10.0 270 > th dose independent rect. 4 11
641 49.23 atmosphere 1015.0 270 < th dose independent rect. 4 11
642 49.23 temperature 10.0 270 > th dose independent rect. 15 13
645 49.23 radiation 1.0 90 < th dose dependent rect. 1 9
649 49.25 precipitation 0.1 720 < th dose independent rect. 12 5
650 49.25 radiation 1.0 720 > th dose independent rect. 12 19
651 49.25 precipitation 0.1 720 < th dose dependent rect. 12 5
690 49.30 radiation 20.0 10 < th dose dependent rect. 10 20
740 49.34 atmosphere 1015.0 10 < th dose independent rect. 16 14
747 49.34 radiation 1.0 90 < th dose dependent rect. 24 23
752 49.35 radiation 1.0 90 < th dose dependent rect. 1 18
753 49.36 temperature 20.0 720 > th dose independent rect. 4 3
754 49.36 humidity 90.0 270 < th dose independent rect. 19 4
784 49.38 humidity 60.0 90 > th dose independent rect. 6 19
810 49.40 radiation 10.0 43200 < th dose dependent rect. 21 6
832 49.44 temperature 30.0 90 < th dose independent rect. 15 15
858 49.45 atmosphere 995.0 10 > th dose independent rect. 6 20
875 49.47 temperature 20.0 720 < th dose independent rect. 3 2
918 49.51 wind 9.0 1440 < th dose independent rect. 3 4
919 49.51 temperature 10.0 1440 > th dose independent rect. 3 4
922 49.51 temperature 30.0 1440 < th dose independent rect. 3 4
926 49.51 humidity 50.0 1440 > th dose independent rect. 3 4
931 49.51 atmosphere 995.0 1440 > th dose independent rect. 3 4
932 49.51 radiation 40.0 1440 < th dose independent rect. 3 4
936 49.51 atmosphere 995.0 270 > th dose independent rect. 4 11
937 49.51 temperature 10.0 1440 > th dose independent rect. 7 20
944 49.52 precipitation 0.1 270 < th dose independent rect. 19 13
945 49.52 radiation 1.0 90 < th dose independent rect. 1 18
950 49.52 precipitation 0.1 270 < th dose dependent rect. 19 13
961 49.54 wind 9.0 270 < th dose independent rect. 15 13
987 49.56 radiation 1.0 90 > th dose independent rect. 18 21