Os01g0502700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone H2A.
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Os01g0502700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone H2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.24 | 0.624 | 13.3 | 0.0914 | 1.91 | 3.17 | 0.383 | -1.49 | -0.159 | 11.1 | 0.7291 | 678 | 8.48 | -- |
| 176.81 | 0.619 | 13.3 | 0.205 | 1.96 | 3.43 | 1.24 | -- | -0.115 | 11 | 0.54 | 677 | 8.54 | -- |
| 176.35 | 0.619 | 13.3 | 0.095 | 1.93 | 3.18 | -- | -1.85 | -0.163 | 11.1 | 0.73 | 676 | 8.53 | -- |
| 183.53 | 0.631 | 13.3 | 0.189 | 1.96 | 3.52 | -- | -- | -0.0897 | 11 | 0.53 | 676 | 8.33 | -- |
| 320.84 | 0.834 | 13.4 | -0.0428 | -- | 1.33 | -- | 0.623 | -0.0764 | -- | 52.05 | 772 | 8.05 | -- |
| 250.08 | 0.741 | 13.4 | 0.46 | 1.51 | -- | -0.707 | -- | 0.0562 | 18 | -- | -- | -- | -- |
| 251.28 | 0.742 | 13.4 | 0.467 | 1.51 | -- | -- | -- | 0.0539 | 18 | -- | -- | -- | -- |
| 262.66 | 0.755 | 13.3 | 0.416 | -- | 2.72 | -- | -- | -0.0297 | -- | 0.1799 | 1958 | 8.62 | -- |
| 182.79 | 0.63 | 13.4 | -- | 1.51 | 3.26 | -- | -- | -0.153 | 11.4 | 0.5 | 672 | 7.82 | -- |
| 369.3 | 0.898 | 13.3 | 0.423 | -- | -- | -- | -- | 0.0194 | -- | -- | -- | -- | -- |
| 257.03 | 0.75 | 13.4 | -- | 1.5 | -- | -- | -- | 0.00189 | 18 | -- | -- | -- | -- |
| 207.03 | 0.67 | 13.4 | -- | -- | 3.54 | -- | -- | -0.132 | -- | 0.4335 | 679 | 6.59 | -- |
| 374.01 | 0.903 | 13.4 | -- | -- | -- | -- | -- | -0.0275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 2 | 183.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 8 | 184.19 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 7 |
| 19 | 185.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 28 | 185.97 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 99 | 190.01 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 110 | 190.93 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 13 |
| 120 | 191.92 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 149 | 194.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 156 | 194.56 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 166 | 195.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 178 | 195.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 201 | 196.10 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 230 | 196.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 310 | 200.54 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 18 |
| 358 | 201.83 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 21 |
| 361 | 201.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 409 | 203.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 452 | 203.80 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 18 |
| 487 | 204.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 490 | 204.45 | humidity | 50 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 535 | 205.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 542 | 205.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 550 | 205.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 553 | 205.38 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 599 | 206.05 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 621 | 206.34 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 23 |
| 651 | 206.64 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |
| 678 | 206.94 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 13 |
| 697 | 207.08 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 730 | 207.51 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 738 | 207.58 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 22 |
| 758 | 207.66 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 23 |
| 768 | 207.72 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 790 | 207.92 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 8 |
| 797 | 208.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 813 | 208.15 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 824 | 208.29 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 843 | 208.49 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 846 | 208.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 853 | 208.59 | radiation | 1 | 90 | < th | dose independent | rect. | 4 | 14 |
| 868 | 208.68 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 871 | 208.70 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 23 |
| 877 | 208.73 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 879 | 208.75 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 23 |
| 946 | 209.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 951 | 209.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 955 | 209.27 | radiation | 1 | 10 | > th | dose independent | rect. | 6 | 10 |
| 967 | 209.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 999 | 209.61 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |